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Add background spectrum peaks, and background-subtracted peaks to exp… #346

Add background spectrum peaks, and background-subtracted peaks to exp…

Add background spectrum peaks, and background-subtracted peaks to exp… #346

Workflow file for this run

name: Build App
on:
push:
branches:
- master
concurrency: ci-${{ github.ref }}
jobs:
build-app:
name: ${{ matrix.config.name }}
runs-on: ${{ matrix.config.os }}
strategy:
fail-fast: false
matrix:
config:
- {
name: "Windows Latest MSVC-2022",
os: windows-latest,
artifact: "windows_msvc2022.7z",
build_type: "Release",
cc: "cl",
cxx: "cl",
archiver: "7z a",
generators: "Visual Studio 17 2022"
}
steps:
- name: Check out repository code
uses: actions/[email protected]
with:
submodules: 'true'
- name: Setup Dev Env
uses: ./.github/actions/setup_dev_env
- name: Cache wxWidgets config/build
id: cache-wx-build
uses: actions/cache@v3
with:
path: '${{runner.temp}}/build_${{ runner.os }}_wx_app'
key: ${{ runner.os }}-build-wxapp-${{ hashFiles('**/CMakeLists.txt') }}
#key: ${{ runner.os }}-build-wxapp
- name: Initial wxWidgets config/build
shell: pwsh
env:
LEAFLET_KEY: ${{ secrets.LEAFLET_KEY }}
if: steps.cache-wx-build.outputs.cache-hit != 'true' && runner.os == 'Windows'
working-directory: ${{runner.temp}}
run: |
if (-Not (Test-Path 'build_${{ runner.os }}_wx_app')){ mkdir build_${{ runner.os }}_wx_app }
cd build_${{ runner.os }}_wx_app
#cmake -DInterSpec_FETCH_DEPENDENCIES=OFF -DCMAKE_INSTALL_PREFIX=InterSpec_app_${{runner.os}}_WebView_latest -DCMAKE_PREFIX_PATH="${{runner.temp}}\install" -DNO_CMAKE_SYSTEM_PATH=ON -DCMAKE_FIND_USE_CMAKE_SYSTEM_PATH=OFF -DCMAKE_C_COMPILER_LAUNCHER=sccache "${{github.workspace}}/target/wxWidgets"
$prefix = "${{runner.temp}}/install"
$install_dir = "InterSpec_app_Windows_WebView_latest"
cmake -DInterSpec_FETCH_DEPENDENCIES=OFF -DUSE_LEAFLET_MAP=ON -DLEAFLET_MAPS_KEY="$env:LEAFLET_KEY" -DUSE_REMOTE_RID=ON -DUSE_REL_ACT_TOOL=ON -DUSE_DETECTION_LIMIT_TOOL=ON -DCMAKE_INSTALL_PREFIX="$install_dir" -DCMAKE_PREFIX_PATH="${{runner.temp}}\install" -DNO_CMAKE_SYSTEM_PATH=ON -DCMAKE_FIND_USE_CMAKE_SYSTEM_PATH=OFF -DCMAKE_C_COMPILER_LAUNCHER=sccache -DCMAKE_CXX_COMPILER_LAUNCHER=sccache -DwxWidgets_ROOT_DIR="$prefix" -DwxWidgets_LIB_DIR="$prefix/lib/vc_x64_lib" -DwxWidgets_CONFIGURATION="msw" -DCMAKE_BUILD_TYPE="Release" -DCMAKE_CONFIGURATION_TYPES="Release" -DCMAKE_CONFIGURATION_TYPES="Release" -G "Ninja" "${{github.workspace}}/target/wxWidgets"
# The build -j1 is needed for debug builds to avoid error "fatal error C1041: cannot open program database...", which I think is happening, not because of the "/FS" flag, but because of multiple targets sharing an intermediate directory - maybe
- name: wxWidgets app build
shell: pwsh
if: runner.os == 'Windows'
working-directory: ${{runner.temp}}/build_${{ runner.os }}_wx_app
run: |
if (Test-Path 'InterSpec_app_Windows_WebView_latest'){ Remove-Item 'InterSpec_app_Windows_WebView_latest' -Recurse -Force }
cmake --build . --config Release
cmake --build . --config Release --target install
$notes = "InterSpec_app_${{ runner.os }}_WebView_latest\build_info.txt"
echo "This is an automated build of InterSpec built on the github infrastruction at $(date)" >> $notes
echo "No testing has been performed on this build." >> $notes
echo "InterSpec code git has SHA: ${{ github.sha }}" >> $notes
echo "The Edge browser runtime is required to be installed to run; this will typically already be installed on Windows 10, and may be installed on Windows 7, but this hasnt been tested." >> $notes
echo "Before zipping, files present for the bbuild are:"
ls
Get-ChildItem InterSpec_app_${{ runner.os }}_WebView_latest*.zip | foreach { Remove-Item -Path $_.FullName }
echo "After removing old zip files"
ls
Compress-Archive -CompressionLevel Optimal -Path .\InterSpec_app_${{ runner.os }}_WebView_latest -DestinationPath InterSpec_app_${{ runner.os }}_WebView_latest_$(get-date -f yyyy-MM-dd).zip
echo "After zipping, files present for the build are:"
ls
echo "And files in base dir"
ls ${{runner.temp}}
ls ${{ github.workspace }}
if (Test-Path -Path '${{runner.temp}}\.sccache'){ ls ${{runner.temp}}\.sccache } else { echo "${{runner.temp}}\.sccache Does not exist"}
if (Test-Path -Path 'D:\a\InterSpec'){ ls D:\a\InterSpec } else { echo "D:\a\InterSpec Does not exist"}
if (Test-Path -Path 'D:\a\InterSpec\InterSpec'){ ls D:\a\InterSpec\InterSpec } else { echo "D:\a\InterSpec\InterSpec Does not exist"}
if (Test-Path -Path 'D:\a\InterSpec\InterSpec\.sccache'){ ls D:\a\InterSpec\InterSpec\.sccache } else { echo "D:\a\InterSpec\InterSpec\.sccache Does not exist"}
# sccache --show-stats || & { "ignore failure"; $global:LASTEXITCODE = 0 }
# sccache --stop-server || & { "ignore failure"; $global:LASTEXITCODE = 0 }
- name: Upload wxWidgets app to as GitHub Artifact
uses: actions/[email protected]
if: runner.os == 'Windows'
with:
name: InterSpec_app_${{ runner.os }}_WebView_latest
path: '${{runner.temp}}/build_${{ runner.os }}_wx_app/InterSpec_app_${{ runner.os }}_WebView_latest'
# - name: Upload sccache Artifact
# uses: actions/[email protected]
# if: runner.os == 'Windows'
# with:
# name: sccache_log
# path: '${{runner.temp}}/sccache_log.txt'
- name: Test app build worked
shell: pwsh
working-directory: ${{runner.temp}}/build_${{ runner.os }}_wx_app/InterSpec_app_${{ runner.os }}_WebView_latest
run: |
$p = Start-Process .\InterSpec.exe -ArgumentList @("--test-load", "--mult-instance", "--no-restore") -PassThru
$errTimedOut = $null
$p | Wait-Process -Timeout 120 -ErrorAction SilentlyContinue -ErrorVariable errTimedOut
if ($errTimedOut) { Stop-Process -InputObject $p -Force }
echo "Exit code of InterSpec test load was was" $p.ExitCode
$rval = $p.ExitCode
exit $rval
# If Stop-Process had to be used, the exit code will be -1. If resources didnt load -12. If timed out inside InterSpec -11. If all was okay, 0
# However, some time in Jun 2023, things started timing out (to give return code -11) regularly, even though everything was fine - so we'll allow this, for the moment, but need to look into more.
# Then test file o
#
# Then maybe do a test with something like Puppeteer, by starting the app on a given port, like:
# $p = Start-Process .\Release\InterSpec.exe -ArgumentList @("--no-token", "--port=8088", "--mult-instance", "--no-restore") -PassThru
# Update the bleeding-edge tag to be current commit
- name: Run latest-tag
uses: EndBug/[email protected]
with:
ref: bleeding-edge
description: Latest successful automated build
- name: Create Release
uses: ncipollo/[email protected]
with:
artifacts: '${{runner.temp}}\build_${{ runner.os }}_wx_app\InterSpec_app_${{ runner.os }}_WebView_latest*.zip'
draft: false
prerelease: true
body: "An automated, and untested build of the latest code pushed to the repository. Requires Windows 10, or may work on Windows 7 with the Edge browser runtime installed."
allowUpdates: true
generateReleaseNotes: false
name: "Development Build"
removeArtifacts: true
replacesArtifacts: true
tag: 'bleeding-edge'
commit: ${{ github.sha }}
makeLatest: true
- name: "Cleanup and finish"
run: |
Get-ChildItem InterSpec_app_${{ runner.os }}_WebView_latest*.zip | foreach { Remove-Item -Path $_.FullName }
echo "Job status is ${{ job.status }}."