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  1. samtools samtools Public

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    C 1.8k 598

  2. htslib htslib Public

    C library for high-throughput sequencing data formats

    C 875 455

  3. bcftools bcftools Public

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

    C 803 251

  4. hts-specs hts-specs Public

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    TeX 689 179

  5. htsjdk htsjdk Public

    A Java API for high-throughput sequencing data (HTS) formats.

    Java 288 243

  6. tabix tabix Public archive

    Note: tabix and bgzip binaries are now part of the HTSlib project.

    C 91 39

Repositories

Showing 10 of 15 repositories
  • bcftools Public

    This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

    samtools/bcftools’s past year of commit activity
    C 803 251 319 11 Updated Sep 5, 2025
  • htslib Public

    C library for high-throughput sequencing data formats

    samtools/htslib’s past year of commit activity
    C 875 455 142 27 Updated Aug 28, 2025
  • samtools Public

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    samtools/samtools’s past year of commit activity
    C 1,776 598 169 17 Updated Aug 19, 2025
  • htsjdk Public

    A Java API for high-throughput sequencing data (HTS) formats.

    samtools/htsjdk’s past year of commit activity
    Java 288 243 269 43 Updated Aug 18, 2025
  • hts-specs Public

    Specifications of SAM/BAM and related high-throughput sequencing file formats

    samtools/hts-specs’s past year of commit activity
    TeX 689 179 184 36 Updated Aug 12, 2025
  • samtools/www.htslib.org’s past year of commit activity
    HTML 8 12 3 0 Updated Jul 14, 2025
  • c-maint Public

    Maintenance scripts used with the htslib/samtools/bcftools repositories

    samtools/c-maint’s past year of commit activity
    Perl 3 3 0 1 Updated Jul 10, 2025
  • htscodecs Public

    Custom compression for CRAM and others.

    samtools/htscodecs’s past year of commit activity
    C 35 21 0 0 Updated Jul 9, 2025
  • htslib-crypt4gh Public

    HTSlib crypt4gh plug-in

    samtools/htslib-crypt4gh’s past year of commit activity
    C 3 2 1 0 Updated Sep 22, 2023
  • klib Public Forked from attractivechaos/klib

    A standalone and lightweight C library

    samtools/klib’s past year of commit activity
    C 0 MIT 637 0 0 Updated Jan 17, 2023