Skip to content

File parsing and writing code for Ensembl

License

Notifications You must be signed in to change notification settings

ridwanamo/ensembl-io

 
 

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Repository files navigation

ensembl-io

Build Status

File parsing and writing code for Ensembl

The ensembl-io repo is intended as a shared codebase for handling the parsing and writing of popular biological formats used by Ensembl, such as BED, BigWig and FASTA. For a full list of supported formats, see the child objects in modules/Bio/EnsEMBL/IO/Parser/.

As the code matures, it is anticipated that various teams within the Ensembl project will begin to integrate Bio::EnsEMBL::IO modules into their pipelines; it will also be used in future releases of the Ensembl website to handle parsing of uploaded data and output of exported data.

All parsers should have associated unit tests, which can also serve as simple tutorials on how to use ensembl-io.

About

File parsing and writing code for Ensembl

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages

  • Perl 99.5%
  • Shell 0.5%