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1. SAIGE-GPU SAIGE-GPU Public

   Forked from arodri7/SAIGE-GPU

   Link to the article : https://www.biorxiv.org/content/10.1101/2024.05.17.594583v1.full.pdf

   C++ 1

2. PB-Dataset-Recommender_Engine PB-Dataset-Recommender_Engine Public

   Algorithms for NCBI, SRA, EBI datasets recommendation and how to get around with comparing your own Datasets. Recommender systems | Bio-NLP

   Jupyter Notebook 2 1

3. compgenomics2021 compgenomics2021 Public

   Using un-assembled genome sequence data from the Centers for Disease Control and Prevention (CDC) proceed through five distinct stages of analysis and interpretation of that data: 1-genome assembly…

   AMPL 1

4. gsea-R gsea-R Public

   Methods for analysis of gene set enrichments, pathway analysis, gene ontologies, functional analysis of metabolomic profiling & understanding correlations and coexpression networks.

   R

5. Human_Protein_Atlas_challenge-kaggle-2021 Human_Protein_Atlas_challenge-kaggle-2021 Public

   Submission of Human Protein Atlas - Single Cell Classification on Kaggle 2021. A weakly supervised multi-label classification problem.

   Jupyter Notebook

6. DREAM_challenge-COVID-19_EHR DREAM_challenge-COVID-19_EHR Public

   DREAM challenge 2021 - To facilitate understanding risk factors that lead to a positive COVID-19 test utilizing electronic health recorded data mapped to the OMOP Common Data Model. UW Medicine cli…

   Jupyter Notebook 2