Viral enumeration using cost-effective wet-mount epifluorescence microscopy for aquatic ecosystems and modern microbialites

Manuscript is peer-reviewed published.
BioRxiv is is published

This is the code and analysis for this article.

Journal citation for BioRxiv pre-print is:
Bellanger M, Visscher PT, White III RA. 2023
Viral enumeration using cost-effective wet-mount epifluorescence microscopy for aquatic ecosystems and modern microbialites. BioRxiv
paper

Journal citation for peer-reviewed publication is:
Bellanger M, Visscher PT, White III RA. 2023
Viral enumeration using cost-effective wet-mount epifluorescence microscopy for aquatic ecosystems and modern microbialites. Applied & Environmental Microbiology
2023 89(12):e0174423.
paper

Protocol

The full step by step protocol is found in the doc/ folder:
protocol

Analysis

This repo holds scripts to process data and build graphs. Outputs, results, and figures are included as well in this repo.

Data

Raw image files and supplemental data are all available at open science framework (OSF)
osf

CONTACT

Please send all queries to Dr. Richard Allen White III
Madeline Bellanger
Or open an issue