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@ramseylab

Ramsey Laboratory at Oregon State University

Computational Systems Biology

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  1. cs340 Public

    Some code for the course CS340, Introduction to Databases, at Oregon State University

    Python 1 4

  2. RTX-KG2 Public

    Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

    1

  3. cerenkov3 Public

    Computational elucidation of the regulatory noncoding variome 3

    Python

  4. ARAX Public

    Our work on the NCATS Biomedical Data Translator project.

  5. Dizzy Public

    Framework for stochastic kinetic modeling of biochemical reaction networks (Java code)

    Java 1

  6. csx46 Public

    Code for the 2020 class Networks in Computational Biology (CS446/546) at Oregon State University

    Jupyter Notebook 14 3

Repositories

Showing 10 of 26 repositories
  • vgrampy Public

    Python tools for analyzing electrochemistry voltammograms

    Python 0 1 1 1 Updated Apr 16, 2025
  • vgramreg Public

    Exploration of regression models for processing square-wave voltammograms to estimate analyte concentration

    Python 0 0 0 0 Updated Apr 15, 2025
  • lab.saramsey.org Public

    Ramsey Lab website

    HTML 0 Apache-2.0 0 0 0 Updated Mar 12, 2025
  • wound-analysis Public

    Software code for the manuscript "Hybrid learning-based healing prediction from a wound image"

    Jupyter Notebook 0 MIT 2 0 0 Updated Feb 20, 2024
  • food-network Public

    Neo4j network of information about recipes and ingredients (h/t Rik Van Bruggen and Yong-Yeol Ahn)

    Shell 1 MIT 0 0 0 Updated Jul 14, 2023
  • ldnh Public

    Process square-wave voltammograms using the LDNH method

    R 1 MIT 0 1 0 Updated Apr 21, 2023
  • cs340 Public

    Some code for the course CS340, Introduction to Databases, at Oregon State University

    Python 1 MIT 4 1 0 Updated May 26, 2022
  • RTX-KG2 Public

    Build system for the RTX-KG2 biomedical knowledge graph, part of the ARAX reasoning system (https://github.com/RTXTeam/RTX)

    0 1 0 0 Updated Feb 9, 2022
  • htsrecomb Public

    Code for finding putative recombination events from high-throughput sequence data from bacterial co-culture experiments

    R 0 Apache-2.0 0 0 0 Updated Nov 24, 2021
  • cerenkov Public

    Computational elucidation of the regulatory noncoding variome

    Python 1 Apache-2.0 0 2 0 Updated Mar 27, 2021
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