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Review rpygeo #39

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be-marc wants to merge 13 commits into r-spatial:gh-pages from be-marc:review-rpygeo

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be-marc commented Mar 10, 2019

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be-marc and others added 3 commits

February 23, 2019 20:58


          Merge pull request #1 from r-spatial/gh-pages

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Update


          First draft

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          rename

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pat-s left a comment

Maybe you can elaborate a bit more on the "magic" going on behind the scenes and show a small use case what is possible now.
If this is already available in the vignette, just copy-paste it here.
People will sometimes not see the vignette but only the blog post.

Adding a bit more code examples would also make reading the post more enjoyable so that it can serve as a standalone resource.

_rmd/2019-03-10-RPyGeo-1_0_0.Rmd Outdated


		[DOWNLOADHERE]

		RPyGeo 1.0.0 has been released on CRAN. The RPyGeo package establishes an interface to the geoprocessing tools of ArcGIS from within R. ArGIS is a geographic information system developed by Esri.

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pat-s Mar 10, 2019

Link to ArcGIS page. Maybe change to "ArcGIS is one of the leading [...]".

_rmd/2019-03-10-RPyGeo-1_0_0.Rmd Outdated


		[DOWNLOADHERE]

		RPyGeo 1.0.0 has been released on CRAN. The RPyGeo package establishes an interface to the geoprocessing tools of ArcGIS from within R. ArGIS is a geographic information system developed by Esri.

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pat-s Mar 10, 2019

add the release date?

_rmd/2019-03-10-RPyGeo-1_0_0.Rmd Outdated


		RPyGeo 1.0.0 has been released on CRAN. The RPyGeo package establishes an interface to the geoprocessing tools of ArcGIS from within R. ArGIS is a geographic information system developed by Esri.

		The new RPyGeo package accesses the ArcPy Python side-package via the [reticulate](https://cran.r-project.org/web/packages/reticulate/index.html) package. ArcGIS provides almost all of it's geoprocessing tools via ArcPy. With RPyGeo these functions are available in R. Additonally RPyGeo provides utilitiy functions to create a seamless workflow between ArcGIS and R.

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pat-s Mar 10, 2019

"The new version of the package"
"ArcPy Python side-package" sounds a bit strange, rephrase?
Put "RPygeo" in backticks or in italics
do a spellcheck

_rmd/2019-03-10-RPyGeo-1_0_0.Rmd Outdated


		The new RPyGeo package accesses the ArcPy Python side-package via the [reticulate](https://cran.r-project.org/web/packages/reticulate/index.html) package. ArcGIS provides almost all of it's geoprocessing tools via ArcPy. With RPyGeo these functions are available in R. Additonally RPyGeo provides utilitiy functions to create a seamless workflow between ArcGIS and R.

		In 2015 Esri released the R-ArcGIS Bridge, a software that also connects ArcGIS and R. Essentially, the R-ArcGIS Bridge offers read, write and conversion functions to transfer data from ArcGIS to R and vice versa. The idea is to use the large number of R packages to solve spatial problems, which cannot be solved with ArcGIS alone. R scripts can be run as geospatial scripts with an interactive user inferface from within ArcGIS. However, no functionality is added for the R user. RPyGeo is able to run the geoprocessing tools of ArcGIS directly from the R session.

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pat-s Mar 10, 2019

link to R-ArcgGIS bridge

"The idea is to use the large number of R packages to solve spatial problems"

-> sth like "to use R to add additional capabilities for solving spatial problems"

"R scripts can be run as geospatial scripts"

-> put "geospatial scripts" in parantheses or explain better what is meant by this in the context of ArcGIS

"However, no functionality is added for the R user. RPyGeo is able to run the geoprocessing tools of ArcGIS directly from the R session."

-> do you want to showcase a difference here? this does not become clear. Maybe add a bit more detail.

_rmd/2019-03-10-RPyGeo-1_0_0.Rmd Outdated

+              The new RPyGeo package accesses the ArcPy Python side-package via the [reticulate](https://cran.r-project.org/web/packages/reticulate/index.html) package. ArcGIS provides almost all of it's geoprocessing tools via ArcPy. With RPyGeo these functions are available in R. Additonally RPyGeo provides utilitiy functions to create a seamless workflow between ArcGIS and R.
+              In 2015 Esri released the R-ArcGIS Bridge, a software that also connects ArcGIS and R. Essentially, the R-ArcGIS Bridge offers read, write and conversion functions to transfer data from ArcGIS to R and vice versa. The idea is to use the large number of R packages to solve spatial problems, which cannot be solved with ArcGIS alone. R scripts can be run as geospatial scripts with an interactive user inferface from within ArcGIS. However, no functionality is added for the R user. RPyGeo is able to run the geoprocessing tools of ArcGIS directly from the R session.
+              The update added many new features to the package. It is now possible to chain ArcPy functions togheter with the pipe operator. Help files for all ArcGIS functions can be viewed directly inside RStudio. Moreover, map algebra expressions can be used to modify raster objects.

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pat-s Mar 10, 2019

The update added many new features to the package. I

"With the new version it is now...

It is now possible to chain ArcPy functions togheter with the pipe operator

-> It is now possible to chain ArcPy functions using the pipe operator

_rmd/2019-03-10-RPyGeo-1_0_0.Rmd Outdated

+              In 2015 Esri released the R-ArcGIS Bridge, a software that also connects ArcGIS and R. Essentially, the R-ArcGIS Bridge offers read, write and conversion functions to transfer data from ArcGIS to R and vice versa. The idea is to use the large number of R packages to solve spatial problems, which cannot be solved with ArcGIS alone. R scripts can be run as geospatial scripts with an interactive user inferface from within ArcGIS. However, no functionality is added for the R user. RPyGeo is able to run the geoprocessing tools of ArcGIS directly from the R session.
+              The update added many new features to the package. It is now possible to chain ArcPy functions togheter with the pipe operator. Help files for all ArcGIS functions can be viewed directly inside RStudio. Moreover, map algebra expressions can be used to modify raster objects.
+              For a detailed instruction on how to use RPyGeo we would like to refer to the [vignette](https://cran.r-project.org/web/packages/RPyGeo/RPyGeo.pdf). It includes a tutorial with all essential RPyGeo functions.

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pat-s Mar 10, 2019

For a detailed instruction on how to use RPyGeo we would like to refer to the vignette.

-> For a detailed instruction on how to use RPyGeo please see the corresponding vignette. (Maybe a pkgdown site would help here? But maybe problematic to generate one on Travis as we need Windows)

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nuest Jul 5, 2019

Also the link is not to the vignette but to the reference PDF. The vignette is at https://cran.r-project.org/web/packages/RPyGeo/vignettes/RPyGeo.html

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pat-s Jul 5, 2019

_rmd/2019-03-10-RPyGeo-1_0_0.Rmd Outdated


		For a detailed instruction on how to use RPyGeo we would like to refer to the [vignette](https://cran.r-project.org/web/packages/RPyGeo/RPyGeo.pdf). It includes a tutorial with all essential RPyGeo functions.

		The devolepment of RPyGeo is now integrated into the r-spatial.org community. If you find any bugs please report them at our new development repository [r-spatial/RPyGeo](https://github.com/r-spatial/RPyGeo) or help us fix them via a pull request.

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pat-s Mar 10, 2019

The devolepment of RPyGeo is now integrated into the r-spatial.org community. If you find any bugs please report them at our new development repository r-spatial/RPyGeo or help us fix them via a pull request.

The source code of RpyGeo is now hosted on Github within the r-spatial organization.


          Second draft

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edzer commented Mar 30, 2019

Is this blog ready to go?

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edzer commented Mar 30, 2019

It's out:
https://www.r-spatial.org/r/2019/03/20/rsaga-1.0.0
https://twitter.com/edzerpebesma/status/1112049988245381121

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pat-s commented Mar 31, 2019

@edzer something went wrong here, the post is about RPyGeo and not RSAGA. The latter has been released in November 18 already. @be-marc wasn't there already a blog post about RSAGA before?
I'm on the phone right now, should check in detail in the next days.

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be-marc commented Mar 31, 2019

Yes this is the old RSAGA blog post. I wrote it in March 2018.

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edzer commented Apr 1, 2019

Sorry about that. Shall I remove it?

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pat-s commented Apr 1, 2019 •

edited

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No worries! Don't remove, just dating it back to its original post date is fine. I do not see the original post date anymore in the list but it should be in the git hist?

I'll try to finish the review here ASAP.

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Thanks for the updated version! Reads much smoother now.

Please start a new sentence on a new line always - this simplifies reviewing.
Also keeping the filename static until a review is finished helps to have a diff history of the review.
Once we are good to go here, you can update the filename/post date and then it can be published.

The short comparison to the R-bridge is really valuable here.

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_rmd/2019-03-11-RPyGeo-1_0_0.Rmd Outdated


		RPyGeo 1.0.0 has been released on 14.11.2018 on CRAN. The RPyGeo package establishes an interface to the geoprocessing tools of ArcGIS from within R. [ArcGIS](https://www.esri.com/en-us/arcgis/about-arcgis/overview) is the leading commercial geographic information system platform, which is developed by Esri since 1999.

		ArcGIS offers access to its geoprocessing tools via a Python site-package called ArcPy. The new version of RPyGeo reads the site-package via the [reticulate](https://cran.r-project.org/web/packages/reticulate/index.html) package into the R session.

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pat-s May 31, 2019

Is "site-package" the correct wording here?

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be-marc May 31, 2019

Yes it is

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+                rpygeo_load()
+              ```
+              Map algebra expressions can be used in RPyGeo with special operators to modify ArcPy raster objects. The resulting temporary files can be saved to the hard disk with the helper function `rpygeo_save()`.

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pat-s May 31, 2019

Helper functions are usually non-exported functions within a package.

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be-marc May 31, 2019

We also called them helper functions in the vignette but we could use another word and change it in all documents.

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pat-s Jun 1, 2019

Ok, I think its not so crucial and the meaning of "helper function" is used in a manifold context. If its consistent everywhere just leave it as it is :)

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be-marc and others added 3 commits

June 1, 2019 13:25


          Update _rmd/2019-03-11-RPyGeo-1_0_0.Rmd

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Co-Authored-By: Patrick Schratz <[email protected]>


          Update _rmd/2019-03-11-RPyGeo-1_0_0.Rmd

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Co-Authored-By: Patrick Schratz <[email protected]>


          Apply suggestions from code review

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Co-Authored-By: Patrick Schratz <[email protected]>

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pat-s commented Jun 1, 2019

@be-marc Good work.

Please

remove the outdated file from the PR
update the post date
take a final look at the post

and then we're good to go here I think 👍

be-marc added 2 commits

June 3, 2019 17:18


          Change pipe operator paragraph


          Update date and remove old post

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be-marc commented Jun 3, 2019

@edzer Ready

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pat-s commented Jun 17, 2019

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edzer commented Jun 17, 2019 •

edited

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Thanks. Since this needs a working ArcGIS license, which I don't have (on my computer), could you please also upload the resulting .markdown file in the _posts directory?


          Add markdown file

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be-marc commented Jun 20, 2019

be-marc added 3 commits

July 20, 2019 20:41


          Change URL

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          Change date

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          Remove wrong post

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edzer commented Jul 21, 2019

Thanks. Is this ready to go live?

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be-marc commented Jul 21, 2019

@edzer The .md file is missing because the makefile does not work for me. Maybe you can run it? You don't need an ArcGIS license because the code chunks are set to eval=FALSE.

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