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Include xtable method for twdtw assessment
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,75 @@ | ||
| #' @aliases xtable | ||
| #' @inheritParams twdtwAssessment-class | ||
| #' @rdname twdtwAssessment-class | ||
| #' | ||
| #' @param x an object of class \code{\link[dtwSat]{twdtwAssessment}}. | ||
| #' @param type table type, 'accuracy' for User's and Producer's Accuracy, | ||
| #' 'matrix' for error matrix, and 'area' for area and uncertainty. | ||
| #' Default is 'accuracy'. | ||
| #' @param time.labels a character or numeric for the time period or NULL to | ||
| #' include all classified periods. Default is NULL. | ||
| #' @param ... other arguments to pass to \code{\link[xtable]{xtable}}. | ||
| #' | ||
| #' @export | ||
| setMethod("xtable", | ||
| signature = signature(x = "twdtwAssessment"), | ||
| definition = function(x, type="accuracy", time.labels=NULL, ...){ | ||
| xtable(x@accuracySummary$ErrorMatrix, ...) | ||
| pt = pmatch(type,c("accuracy","matrix","area")) | ||
| switch(pt, | ||
| .xtable.accuracy(x=x@accuracySummary, ...), | ||
| .xtable.matrix(x=x@accuracySummary$ErrorMatrix, ...), | ||
| .xtable.area(x=x@accuracySummary$AreaUncertainty, ...) | ||
| ) | ||
| } | ||
| ) | ||
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| .xtable.accuracy = function(x, ...){ | ||
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| prop = x$ProportionMatrix | ||
| prop = data.frame(apply(prop[,!names(prop)%in%c("Area","w")], 1, FUN = sprintf, fmt="%.2f"), stringsAsFactors = FALSE) | ||
| prop$`User's` = "" | ||
| prop$`Producers's` = "" | ||
| prop$`Overall` = "" | ||
|
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| ua = sprintf("%.2f$\\pm$%.2f", round(x$UsersAccuracy[,"Accuracy"],2), round(x$UsersAccuracy[,"ci"], 2)) | ||
| pa = sprintf("%.2f$\\pm$%.2f", round(x$ProducersAccuracy[,"Accuracy"],2), round(x$ProducersAccuracy[,"ci"], 2)) | ||
| oa = sprintf("%.2f$\\pm$%.2f", round(x$OverallAccuracy["Accuracy"],2), round(x$OverallAccuracy["ci"], 2)) | ||
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| prop$`User's`[1:length(ua)] = ua | ||
| prop$`Producers's`[1:length(pa)] = pa | ||
| prop$`Overall`[1:length(oa)] = oa | ||
| tbl = xtable(prop) | ||
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||
| comment = list() | ||
| comment$pos = list() | ||
| comment$pos[[1]] = c(nrow(tbl)) | ||
| comment$command = c(paste("\\hline \n", "Test foot note. \n", sep = "")) | ||
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| print.xtable(tbl, add.to.row = comment, sanitize.text.function = function(x) x) | ||
| } | ||
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| .xtable.matrix = function(x, ...){ | ||
| tbl = xtable(x, digits = c(rep(0, ncol(x)-1), 2, 2), ...) | ||
| print.xtable(tbl, sanitize.text.function = function(x) x) | ||
| } | ||
|
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| .xtable.area = function(x, ...){ | ||
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| x=twdtw_assess@accuracySummary$AreaUncertainty | ||
| x = data.frame(x) | ||
|
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| mp = sprintf("%.2f", round(unlist(x$Mapped),2)) | ||
| ad = sprintf("%.2f", round(unlist(x$Adjusted),2)) | ||
| ci = sprintf("$\\pm$%.2f", round(unlist(x$ci),2)) | ||
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| tbl = data.frame(mp, ad, ci) | ||
| names(tbl) = c("Mapped", "Adjusted", "Margin of error (95\\% CI)") | ||
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| tbl = xtable(tbl) | ||
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| print.xtable(tbl, sanitize.text.function = function(x) x) | ||
| } | ||
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