dbConnect: clean up argument checks #73
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| on: | |
| push: | |
| branches: | |
| - master | |
| - main | |
| pull_request: | |
| branches: | |
| - master | |
| - main | |
| name: DBs + Posit Pro Drivers (Linux) | |
| jobs: | |
| database: | |
| runs-on: ubuntu-latest | |
| services: | |
| oracle: | |
| image: gvenzl/oracle-xe:21.3.0 | |
| ports: | |
| - 1521:1521 | |
| env: | |
| ORACLE_RANDOM_PASSWORD: true | |
| ORACLE_DATABASE: test | |
| APP_USER: RodbcR | |
| APP_USER_PASSWORD: Password12 | |
| options: >- | |
| --health-cmd healthcheck.sh | |
| --health-interval 10s | |
| --health-timeout 5s | |
| --health-retries 10 | |
| postgres: | |
| image: postgres | |
| ports: | |
| - 5432:5432 | |
| env: | |
| POSTGRES_USER: postgres | |
| POSTGRES_PASSWORD: password | |
| POSTGRES_DB: test | |
| options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5 | |
| sqlserver: | |
| image: mcr.microsoft.com/mssql/server:2017-latest-ubuntu | |
| ports: | |
| - 1433:1433 | |
| env: | |
| ACCEPT_EULA: Y | |
| SA_PASSWORD: Password12 | |
| env: | |
| CRAN: "https://packagemanager.rstudio.com/cran/__linux__/jammy/latest" | |
| ODBCSYSINI: ${{ github.workspace }}/.github/odbc | |
| TNS_ADMIN: ${{ github.workspace }}/.github/odbc | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: r-lib/actions/setup-r@v2 | |
| - name: Install MySQL Driver | |
| run: | | |
| sudo systemctl start mysql.service | |
| mysql -uroot -h127.0.0.1 -proot -e 'CREATE DATABASE `test`;' | |
| echo "ODBC_CS_MYSQL=dsn=ProMySQL" >> $GITHUB_ENV | |
| mkdir -p $ODBCSYSINI/pro_drivers/mysql | |
| touch $ODBCSYSINI/pro_drivers/mysql.tar.gz | |
| curl ${{ secrets.PRO_DRIVER_MYSQL }} --output $ODBCSYSINI/pro_drivers/mysql.tar.gz | |
| tar -xvzf $ODBCSYSINI/pro_drivers/mysql.tar.gz -C $ODBCSYSINI/pro_drivers/mysql | |
| - name: Install SQL Server Driver | |
| run: | | |
| echo "ODBC_CS_SQLSERVER=dsn=ProMicrosoftSQLServer;UID=SA;PWD=Password12" >> $GITHUB_ENV | |
| mkdir -p $ODBCSYSINI/pro_drivers/sql_server | |
| touch $ODBCSYSINI/pro_drivers/sql_server.tar.gz | |
| curl ${{ secrets.PRO_DRIVER_SQL_SERVER }} --output $ODBCSYSINI/pro_drivers/sql_server.tar.gz | |
| tar -xvzf $ODBCSYSINI/pro_drivers/sql_server.tar.gz -C $ODBCSYSINI/pro_drivers/sql_server | |
| - name: Install Oracle Driver | |
| run: | | |
| echo "ODBC_CS_ORACLE=dsn=ProOracle;UID=RodbcR;PWD=Password12;DBQ=test" >> $GITHUB_ENV | |
| .github/odbc/install-oracle-driver.sh | |
| echo "LD_LIBRARY_PATH=/opt/oracle/instantclient_21_12:$LD_LIBRARY_PATH" >> $GITHUB_ENV | |
| mkdir -p $ODBCSYSINI/pro_drivers/oracle | |
| touch $ODBCSYSINI/pro_drivers/oracle.tar.gz | |
| curl ${{ secrets.PRO_DRIVER_ORACLE }} --output $ODBCSYSINI/pro_drivers/oracle.tar.gz | |
| tar -xvzf $ODBCSYSINI/pro_drivers/oracle.tar.gz -C $ODBCSYSINI/pro_drivers/oracle | |
| - name: Install PostgreSQL Driver | |
| run: | | |
| echo "ODBC_CS_POSTGRES=dsn=ProPostgreSQL" >> $GITHUB_ENV | |
| mkdir -p $ODBCSYSINI/pro_drivers/postgresql | |
| touch $ODBCSYSINI/pro_drivers/postgresql.tar.gz | |
| curl ${{ secrets.PRO_DRIVER_POSTGRESQL }} --output $ODBCSYSINI/pro_drivers/postgresql.tar.gz | |
| tar -xvzf $ODBCSYSINI/pro_drivers/postgresql.tar.gz -C $ODBCSYSINI/pro_drivers/postgresql | |
| - name: Install Snowflake Driver | |
| run: | | |
| echo "ODBC_CS_SNOWFLAKE=dsn=Snowflake" >> $GITHUB_ENV | |
| mkdir -p $ODBCSYSINI/pro_drivers/snowflake | |
| touch $ODBCSYSINI/pro_drivers/snowflake.tar.gz | |
| curl ${{ secrets.PRO_DRIVER_SNOWFLAKE }} --output $ODBCSYSINI/pro_drivers/snowflake.tar.gz | |
| tar -xvzf $ODBCSYSINI/pro_drivers/snowflake.tar.gz -C $ODBCSYSINI/pro_drivers/snowflake | |
| echo "Driver=$ODBCSYSINI/pro_drivers/snowflake/bin/lib/libsnowflakeodbc_sb64.so" | tee -a $ODBCSYSINI/odbc.ini | |
| # note that this assumes Snowflake is the last odbc.ini entry | |
| - name: Prepare Snowflake private key | |
| run: | | |
| echo "${{ secrets.SNOWFLAKE_PRIVATE_KEY }}" > $ODBCSYSINI/private_key.pem | |
| echo "PRIV_KEY_FILE=$ODBCSYSINI/private_key.pem" | tee -a $ODBCSYSINI/odbc.ini | |
| export SNOWFLAKE_PRIVATE_KEY_EXISTS=TRUE | |
| - name: Install dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| needs: check | |
| - name: Install locally to avoid error with test_local() | |
| run: | | |
| R CMD INSTALL . | |
| env: | |
| LIB_DIR: /usr/lib/x86_64-linux-gnu/ | |
| INCLUDE_DIR: /usr/include | |
| - name: Test | |
| run: | | |
| options("odbc.interruptible"=TRUE);testthat::test_local(reporter = testthat::ProgressReporter$new(max_failures = Inf, update_interval = Inf)) | |
| shell: Rscript {0} |