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DEV: Update dev requirements and pre-commit configuration #2922

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Closes #2918.

While updating the pre-commit configuration and applying the fixes, this removes the unused black and flake8 pre-commit configuration as well.

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codecov bot commented Oct 23, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 96.36%. Comparing base (72a8838) to head (308a91f).

Additional details and impacted files
@@           Coverage Diff           @@
##             main    #2922   +/-   ##
=======================================
  Coverage   96.36%   96.36%           
=======================================
  Files          52       52           
  Lines        8744     8744           
  Branches     1589     1589           
=======================================
  Hits         8426     8426           
  Misses        190      190           
  Partials      128      128           

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