NCBI protein crawler and extended k-mer transformer

v0.0.9

Extended KMersTransformer to support editable sliding window

Migration to Python 3.8 with Sphinx docs

v0.0.8

Merge branch 'develop'

ESM embedding integration

It will contains PyTorch implementation of and pre-trained weights for the transformer protein language models

Bugfix for Word2VecModelManager

v0.0.6.2

Merge branch 'develop'

Bacteriophage DNA embedding

v0.0.6.1

Merge branch 'develop'

Initial CI/CD integration with tests execution

v0.0.5

Merge branch 'master' of https://github.com/ptynecki/PHAGES2050

Improved setup.py script and GitHub integration

v0.0.4

PyPI setup refactored and fixed

Bacteriophage proteins embedding

This release includes proteins embedding for bacteriophages.

Set of bugfixes for 0.0.1

Set of bugfixes for last stable release.

Bacteriophages taxonomy and host extractor

By this release we're going to share bacteriophages' taxonomy and host data extractors directly from the NCBI repository. Users who want to use it are obligated to pass the accession number for the sample which are in their interests.