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1. VAN-GAN VAN-GAN Public

   VAN-GAN: Vessel Segmentation Generative Adversarial Network. A tool to segment 3D vascular networks without paired training data.

   Python 16 2

2. V-System V-System Public

   A project to create synthetic vascular networks utilising L-Systems.

   Python 14 4

3. Vascular-TDA Vascular-TDA Public

   Software to analyse the topology of vascular networks.

   Python 8

4. 3D-CNN 3D-CNN Public

   Supervised segmentation of 3-dimensional images using a convolutional neural network.

   Python 1

5. Reanimate Reanimate Public

   The Reanimate C++ library to simulate fluid and mass transport in microvascular tissue.

   C++ 1 1

6. Confocal_Cell_Analysis Confocal_Cell_Analysis Public

   A Python-based tool for processing, segmenting, and analysing confocal microscopy images. This pipeline uses Cellpose for instance segmentation of cytoplasm and nuclei, and applies intensity thresh…

   Python