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Feature/adding examples of DeepONets #149

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Commits on Oct 10, 2023

  1. Added new documentation

    RBirmiwal committed Oct 10, 2023
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  2. adding nojekyll

    Birmiwal, Rahul R committed Oct 10, 2023
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  3. Merge branch 'birmiwal.rahul_development' of https://github.com/pnnl/…

    …neuromancer into birmiwal.rahul_development
    Birmiwal, Rahul R committed Oct 10, 2023
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Commits on Oct 11, 2023

  1. trying alternative solution GHA

    Birmiwal, Rahul R committed Oct 11, 2023
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  2. bug fix

    Birmiwal, Rahul R committed Oct 11, 2023
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  3. bug fix

    Birmiwal, Rahul R committed Oct 11, 2023
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Commits on Oct 12, 2023

  1. added random walk signals to signals dictionary, modified signals tes…

    …t to test for any numpy data type
    Seth1Briney committed Oct 12, 2023
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Commits on Oct 13, 2023

  1. Merge pull request #102 from pnnl/rd-walk-signals

    added random walk signals to signals dictionary, modified signals tes…
    drgona authored Oct 13, 2023
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  2. adding test readme to test changes to docs workflow

    Birmiwal, Rahul R committed Oct 13, 2023
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  3. re-adding original readme

    Birmiwal, Rahul R committed Oct 13, 2023
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  4. testing modification to docs -- activations

    Birmiwal, Rahul R committed Oct 13, 2023
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  5. re-adding original activatoins.rst

    Birmiwal, Rahul R committed Oct 13, 2023
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  7. fix readmes

    drgona committed Oct 13, 2023
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Commits on Oct 14, 2023

  1. updated cvxpy layer example

    drgona committed Oct 14, 2023
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Commits on Oct 15, 2023

  1. updated cvxpylayer example

    drgona committed Oct 15, 2023
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Commits on Oct 16, 2023

  1. cvxpy layer notebook

    drgona committed Oct 16, 2023
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  2. Merge pull request #104 from pnnl/develop

    Develop
    drgona authored Oct 16, 2023
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  4. Merge pull request #105 from pnnl/lower-umax-twotank

    change umax back to (0.5, 0.5) in TwoTank due to numerical instability issues
    drgona authored Oct 16, 2023
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Commits on Oct 17, 2023

  1. adding progress to test_system

    Birmiwal, Rahul R committed Oct 17, 2023
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Commits on Oct 18, 2023

  1. updates to test problem and system

    Birmiwal, Rahul R committed Oct 18, 2023
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  2. testing activatiosn docss

    Birmiwal, Rahul R committed Oct 18, 2023
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  3. latest updates to test system and problem

    Birmiwal, Rahul R committed Oct 18, 2023
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Commits on Oct 19, 2023

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  2. Revisions to github action script to push to gh-pages

    Birmiwal, Rahul R committed Oct 19, 2023
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  3. fix issue

    Birmiwal, Rahul R committed Oct 19, 2023
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  4. adding original activations docs

    Birmiwal, Rahul R committed Oct 19, 2023
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  5. fix to run on personal branch push to test

    Birmiwal, Rahul R committed Oct 19, 2023
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  6. bug fix

    Birmiwal, Rahul R committed Oct 19, 2023
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Commits on Oct 20, 2023

  1. updates to test system and problem

    Birmiwal, Rahul R committed Oct 20, 2023
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  2. updating update_docs so it runs only on master

    Birmiwal, Rahul R committed Oct 20, 2023
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  3. fixing docstring for MovingHorizon

    Birmiwal, Rahul R committed Oct 20, 2023
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  4. updating readme to reflect new docs process

    Birmiwal, Rahul R committed Oct 20, 2023
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Commits on Oct 23, 2023

  1. experiments koopman control

    drgona committed Oct 23, 2023
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  2. update system.show() method

    citations to koopman examples
    drgona committed Oct 23, 2023
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  3. remove file

    drgona committed Oct 23, 2023
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Commits on Oct 25, 2023

  1. New feat: update energy

    LucasBoTang committed Oct 25, 2023
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  2. Merge pull request #110 from LucasBoTang/gradproj

    New feat: Update Violation Energy for Projected Gradient
    drgona authored Oct 25, 2023
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Commits on Oct 28, 2023

  1. updating readme in docs to include info about GHA

    Birmiwal, Rahul R committed Oct 28, 2023
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  2. revision to include line-by-line comments

    Birmiwal, Rahul R committed Oct 28, 2023
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Commits on Oct 29, 2023

  1. refactored some code and improved readability and removed test case f…

    …or isolated graph to match new show() in system on develop branch
    Birmiwal, Rahul R committed Oct 29, 2023
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Commits on Oct 30, 2023

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  2. updated docstring of MovingHorizon forward. The output should indeed …

    …by (ndelay, batch, dim) dimension
    Birmiwal, Rahul R committed Oct 30, 2023
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  3. removing nojekyll file -- not needed for docs push

    Birmiwal, Rahul R committed Oct 30, 2023
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  4. Merge pull request #107 from pnnl/birmiwal.rahul_development

    Birmiwal.rahul development
    RBirmiwal authored Oct 30, 2023
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Commits on Nov 1, 2023

  1. update pyproject.toml with latest version number

    Birmiwal, Rahul R committed Nov 1, 2023
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  2. remove helper.py from tests

    Birmiwal, Rahul R committed Nov 1, 2023
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  3. added version 1.4.2 placeholders in readme files

    Birmiwal, Rahul R committed Nov 1, 2023
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Commits on Nov 3, 2023

  1. potential fix to bias logic issue

    Birmiwal, Rahul R committed Nov 3, 2023
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  2. potential fix to bias logic issue. Removed a typo

    Birmiwal, Rahul R committed Nov 3, 2023
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  3. modifying notebooks to a different install line and adding note refle…

    …cting lida 'error'
    Birmiwal, Rahul R committed Nov 3, 2023
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  4. adding notebook that showscases Pytorch Lightning integration for pro…

    …blem and trainer
    Birmiwal, Rahul R committed Nov 3, 2023
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Commits on Nov 7, 2023

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  2. Merge pull request #119 from pnnl/file_emulator_fix

    Fixed positional argument error and added support for Time data
    drgona authored Nov 7, 2023
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  4. Merge pull request #120 from pnnl/develop

    NeuroMANCER 1.4.2
    madelynshapiro authored Nov 7, 2023
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  5. Update README.md

    fix readme link
    madelynshapiro authored Nov 7, 2023
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  6. Update README.md

    drgona authored Nov 7, 2023
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  7. Update README.md

    drgona authored Nov 7, 2023
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  8. Update RELEASE_NOTES.md

    drgona authored Nov 7, 2023
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Commits on Nov 8, 2023

  1. fix for issue 111

    Birmiwal, Rahul R committed Nov 8, 2023
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  2. Merge pull request #121 from pnnl/master

    updated readme
    drgona authored Nov 8, 2023
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Commits on Nov 10, 2023

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  2. Fix to linear.py

    Birmiwal, Rahul R committed Nov 10, 2023
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Commits on Nov 13, 2023

  1. testing lightning integration for NODE problems

    Birmiwal, Rahul R committed Nov 13, 2023
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  2. modifying notebooks to a different install line and adding note refle…

    …cting lida 'error'
    Birmiwal, Rahul R committed Nov 13, 2023
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  3. adding cvxpy, etc to pyproject

    Birmiwal, Rahul R committed Nov 13, 2023
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  4. adding casadi to pyproject

    Birmiwal, Rahul R committed Nov 13, 2023
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  5. added numpy import that was missing

    Birmiwal, Rahul R committed Nov 13, 2023
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  6. potential fix to bias logic issue

    Birmiwal, Rahul R committed Nov 13, 2023
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  7. potential fix to bias logic issue. Removed a typo

    Birmiwal, Rahul R committed Nov 13, 2023
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  8. Fix to linear.py

    Birmiwal, Rahul R committed Nov 13, 2023
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  9. Merge branch 'bug/108-linear-base' of https://github.com/pnnl/neuroma…

    …ncer into bug/108-linear-base
    Birmiwal, Rahul R committed Nov 13, 2023
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  10. Merge pull request #123 from pnnl/bug/116-koopman-operators-imports

    Bug/116 koopman operators imports
    drgona authored Nov 13, 2023
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  11. Merge pull request #124 from pnnl/bug/108-linear-base

    Bug/108 linear base
    drgona authored Nov 13, 2023
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Commits on Nov 14, 2023

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  2. Merge pull request #125 from LucasBoTang/param_freeze

    Add `freeze` and `unfreeze` Methods to `Node`, `System` and `Problem` Classes
    drgona authored Nov 14, 2023
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Commits on Nov 15, 2023

  1. adding files protoyping lightning integration for generalized problem…

    …/datasets
    Birmiwal, Rahul R committed Nov 15, 2023
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Commits on Dec 12, 2023

  1. protoyping source code for lightning integration and GPU support

    Birmiwal, Rahul R committed Dec 12, 2023
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  2. beginning folder containing lightning and gpu support examples

    Birmiwal, Rahul R committed Dec 12, 2023
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  3. adding initial draft of version showcasing distributed training suppo…

    …rt across GPU with lightning
    Birmiwal, Rahul R committed Dec 12, 2023
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Commits on Dec 13, 2023

  1. updates to source code for lightning

    Birmiwal, Rahul R committed Dec 13, 2023
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  2. updating lightning examples, including one that solves issue 129 (luc…

    …as) for complex objective function
    Birmiwal, Rahul R committed Dec 13, 2023
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  3. adding notebook that showscases Pytorch Lightning integration for pro…

    …blem and trainer
    Birmiwal, Rahul R committed Dec 13, 2023
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  4. fix for issue 111

    Birmiwal, Rahul R committed Dec 13, 2023
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  5. testing lightning integration for NODE problems

    Birmiwal, Rahul R committed Dec 13, 2023
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  6. adding files protoyping lightning integration for generalized problem…

    …/datasets
    Birmiwal, Rahul R committed Dec 13, 2023
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  7. protoyping source code for lightning integration and GPU support

    Birmiwal, Rahul R committed Dec 13, 2023
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  8. beginning folder containing lightning and gpu support examples

    Birmiwal, Rahul R committed Dec 13, 2023
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  9. adding initial draft of version showcasing distributed training suppo…

    …rt across GPU with lightning
    Birmiwal, Rahul R committed Dec 13, 2023
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  10. updates to source code for lightning

    Birmiwal, Rahul R committed Dec 13, 2023
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  11. updating lightning examples, including one that solves issue 129 (luc…

    …as) for complex objective function
    Birmiwal, Rahul R committed Dec 13, 2023
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  12. eerge branch 'feature/lightning-integration' of https://github.com/pn…

    …nl/neuromancer into feature/lightning-integration
    
    re merge:# the commit.
    Birmiwal, Rahul R committed Dec 13, 2023
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Commits on Jan 8, 2024

  1. updates for lightning integration

    Birmiwal, Rahul R committed Jan 8, 2024
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Commits on Jan 16, 2024

  1. revising source code files for lightning

    Birmiwal, Rahul R committed Jan 16, 2024
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Commits on Jan 17, 2024

  1. fixing issues for loading weights back into problem

    Birmiwal, Rahul R committed Jan 17, 2024
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  2. adding revised lightning examples folder

    Birmiwal, Rahul R committed Jan 17, 2024
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  3. changed Eq to nn.Module

    Birmiwal, Rahul R committed Jan 17, 2024
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  4. updating tests

    Birmiwal, Rahul R committed Jan 17, 2024
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  5. modified custom training step slightly

    Birmiwal, Rahul R committed Jan 17, 2024
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  6. revising README

    Birmiwal, Rahul R committed Jan 17, 2024
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  7. added wrong version earlier

    Birmiwal, Rahul R committed Jan 17, 2024
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  8. fixed typo

    Birmiwal, Rahul R committed Jan 17, 2024
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  9. refactored littrainer and removed monitor_metric (redundant)

    Birmiwal, Rahul R committed Jan 17, 2024
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Commits on Jan 18, 2024

  1. more revisions

    Birmiwal, Rahul R committed Jan 18, 2024
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Commits on Jan 26, 2024

  1. updates to include wandb, logging integration and warmup fix

    Rahul Birmiwal committed Jan 26, 2024
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  2. adding README

    Rahul Birmiwal committed Jan 26, 2024
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  3. adding lightning and wandb to pyproject.toml

    Rahul Birmiwal committed Jan 26, 2024
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  4. adding tensorboard example

    Rahul Birmiwal committed Jan 26, 2024
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  5. removing PINN example

    Rahul Birmiwal committed Jan 26, 2024
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  7. removing old notebook

    Rahul Birmiwal committed Jan 26, 2024
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  8. adding snippet for wanbd logger

    Rahul Birmiwal committed Jan 26, 2024
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  9. rremoving old noteboook

    Rahul Birmiwal committed Jan 26, 2024
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  1. added cvxpy, etc to resolve conflict

    Rahul Birmiwal committed Apr 5, 2024
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  2. updated version number and updated email

    Rahul Birmiwal committed Apr 5, 2024
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  3. Merge pull request #133 from pnnl/feature/lightning-integration

    Integration of Lightning
    RBirmiwal authored Apr 5, 2024
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  4. fixed indent

    Rahul Birmiwal committed Apr 5, 2024
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  1. removed straggler files

    Birmiwal, Rahul R committed Apr 9, 2024
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  2. adding README and release_notes

    Birmiwal, Rahul R committed Apr 9, 2024
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  3. fixed wording

    Birmiwal, Rahul R committed Apr 9, 2024
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    Birmiwal, Rahul R committed Apr 9, 2024
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    Birmiwal, Rahul R committed Apr 9, 2024
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  6. typo

    RBirmiwal authored Apr 9, 2024
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  7. update README

    Birmiwal, Rahul R committed Apr 9, 2024
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    Birmiwal, Rahul R committed Apr 9, 2024
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  9. fix typos

    Birmiwal, Rahul R committed Apr 9, 2024
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  10. Merge pull request #142 from pnnl/develop

    Merge develop (1.5) into master
    RBirmiwal authored Apr 9, 2024
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  1. Update pyproject.toml

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  2. update lightning notebook language to inform user if running on colab…

    … to use GPU runtime
    Birmiwal, Rahul R committed Apr 10, 2024
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  3. Merge pull request #143 from pnnl/develop

    hotfix -- toml
    RBirmiwal authored Apr 10, 2024
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Commits on Apr 19, 2024

  1. Fix typos in intro tutorial docs

    Donna Vakalis committed Apr 19, 2024
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Commits on Apr 23, 2024

  1. Make tests run on linux

    Add 2 necessary packages (lightning, wandb) in manual installation section for linux.
    Small bug fix in test_constraint: sampled_from needs a list as argument.
    Some tests still fail but at least pytest can now run in /test directory.
    l2late committed Apr 23, 2024
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  2. Merge pull request #147 from DonnaVakalis/fix-typos

    Fix typos in intro tutorial docs
    drgona authored Apr 23, 2024
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  3. Merge pull request #148 from l2late/master

    Make tests run on linux
    drgona authored Apr 23, 2024
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  1. Fixed typos in parametric programming tutorials

    Donna Vakalis committed May 1, 2024
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  2. Merge branch 'master' into new-typos

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  3. Merge pull request #150 from DonnaVakalis/new-typos

    Fixed minor typos in parametric programming tutorials
    drgona authored May 1, 2024
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  1. TLC of example

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  1. Add latest progress

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Commits on May 10, 2024

  1. Merge pull request #151 from pnnl/feature/kan_integration

    Feature/KAN integration
    drgona authored May 10, 2024
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  2. Update README.md

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  6. Fixed pydot error

    caryfaulknerPNNL committed May 29, 2024
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  7. Fixed pydot error

    caryfaulknerPNNL committed May 29, 2024
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  9. Added custom legends

    caryfaulknerPNNL committed May 29, 2024
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  11. Merge pull request #157 from pnnl/issue_improve_building_examples

    Improving building example notebooks
    drgona authored May 29, 2024
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  3. Update ode.py

    adding trainable parameter alpha to LV system
    drgona authored May 30, 2024
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  4. Merge pull request #158 from MatisPatel/fixing--LV

    Fixing  lv equations in dynamics.ode and psl.autonomous
    drgona authored May 30, 2024
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  6. Update README.md

    drgona authored May 30, 2024
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Commits on Jun 5, 2024

  1. Merge pull request #161 from pnnl/master

    getting develop up to date with master
    drgona authored Jun 5, 2024
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    colbyham committed Jun 7, 2024
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    colbyham committed Jun 14, 2024
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    colbyham committed Jun 14, 2024
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  7. Fix comment for final link

    colbyham committed Jun 14, 2024
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Commits on Jun 27, 2024

  1. Remove DeepONet class from blocks, move DeepONet class to dynamics.op…

    …erators and transform it into a nn.Module
    colbyham committed Jun 27, 2024
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  39. Fix comment for final link

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  42. Remove DeepONet class from blocks, move DeepONet class to dynamics.op…

    …erators and transform it into a nn.Module
    colbyham committed Jun 27, 2024
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  43. Merge remote-tracking branch 'origin/feature/deeponet_examples' into …

    …feature/deeponet_examples
    
    # Conflicts:
    #	README.md
    #	examples/DeepONets/Part_1_antiderivative_aligned.ipynb
    #	src/neuromancer/modules/blocks.py
    colbyham committed Jun 27, 2024
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