MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

A microbiome analysis toolkit for R

A series of Jupyter notebooks that walk you through the fundamentals of Machine Learning and Deep Learning in Python using Scikit-Learn, Keras and TensorFlow 2.

R package for an introduction to transkingdom network analysis

Course materials for BIOST561

Bioinformatics containers

Robs manual for the computational genomics and bioinformatics class.

Metatranscriptomics Tutorial

Using kallisto for metagenomic analysis

A curated list of awesome Bioinformatics libraries and software.

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

R for data science: a book

Collection of various scripts

Scripts to download genomes from the NCBI FTP servers