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1. STREAM STREAM Public

   STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

   Jupyter Notebook 177 50

2. CRISPResso2 CRISPResso2 Public

   Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments

   Python 297 100

3. haystack_bio haystack_bio Public

   Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

   HTML 48 11

4. CRISPR-SURF CRISPR-SURF Public

   Python 16 3

5. PrimeDesign PrimeDesign Public

   Software tool for the flexible design of pegRNAs and ngRNAs for prime editing!

   Python 24 6

6. MotifRaptor MotifRaptor Public

   Explore the effect of genetic variants on transcription factor binding sites

   Python 9 2