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PICRUSt2 v2.1.4-b
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@gavinmdouglas gavinmdouglas released this 15 May 12:57
· 168 commits to master since this release
v2.1.4-b
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Learn about vigilant mode.

Major changes:

  • Added metagenome_contrib option to pipeline script (i.e. a similar breakdown of taxonomic contributors to functions as output in PICRUSt1).
  • Changed default output files to be gzipped, which greatly saves on disk usage.
  • Bumped to castor version 1.3.6.

Thanks to @efratmuller for suggesting the option to remove intermediate files and for an implementation in R for getting metagenome contributions to compare against.

Minor changes:

  • Added flag to picrust2_pipeline.py to optionally remove intermediate files.
  • Changed pd.read_table calls to pd.read_csv to avoid future warning.
  • Removed unused tutorial folders.
  • Removed unnecessary future imports.
  • Changed pipeline timing to only be printed if verbose option set.
  • Minor typo and help documentation changes.
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