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Merge pull request galaxyproject#5860 from RZ9082/crisprstudio
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Add bio.tools ref to crisprstudio
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bebatut authored Mar 13, 2024
2 parents fc685e8 + cb24109 commit 539468c
Showing 1 changed file with 4 additions and 1 deletion.
5 changes: 4 additions & 1 deletion tools/crispr_studio/crispr_studio.xml
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<description>
facilitate and accelerate CRISPR array visualization from a GFF3 file generated with CRISPRDetect
</description>
<xrefs>
<xref type="bio.tools">crisprstudio</xref>
</xrefs>
<requirements>
<requirement type="package" version="1">crispr_studio</requirement>
</requirements>
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<param name="isolate_list" type="data" format="txt" optional="true" label="List of Isolates to show" help="Generate the figure with the subset of isolates listed in the file"/>
</when>
</conditional>
<param name="n" argument="-n" truevalue="-n" falsevalue="" type="boolean" label="Show the size of the spacers over the boxed diamonds?" help="We recommend to use this option only for experimental analysis of the data"/>
<param argument="-n" truevalue="-n" falsevalue="" type="boolean" label="Show the size of the spacers over the boxed diamonds?" help="We recommend to use this option only for experimental analysis of the data"/>
<param argument="-f" truevalue="-f" falsevalue="" type="boolean" label="Skip the verification of the fasta file generated from the GFF file?" help="The verification is mainly based on the length of the spacer sequences. If a spacer is 1.5 time shorter or longer than the average spacer size of the dataset, a warning is raised and the script stops (Verification is ran by default)."/>
<param name="cut_off" type="integer" optional="true" label="Score cutoff for pairing of the spacers"/>
<param argument="-gU" truevalue="-gU" falsevalue="" type="boolean" label="Gray out unique?" help="The unique spacers will be grayed"/>
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