Updated the input dataypes for pairtools parse + minor changes (#6020) #138

Job	Run time
Setup cache and determine changed repositories (3.11)	5m 16s
Lint tool-list (3.11)	3m 40s
Lint R scripts (ubuntu-20.04, release)	2m 52s
Lint Python scripts	0s
Check file sizes	0s
Test tools (0, 3.11)	23m 9s
Test tools (1, 3.11)	26m 24s
Test tools (2, 3.11)	1h 2m 23s
Test tools (3, 3.11)	1h 8m 38s
Combine chunked test results (3.11)	38s
Deploy	0s
Check workflow success	0s
Report deploy status	0s
	3h 13m 0s

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