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@patonlab

Paton Lab | Colorado State University

Paton Research Group at Colorado State

👋 Welcome to the Paton Research Group

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🔬 About Us

The Paton Research Group develops computational tools to accelerate chemical discovery. We combine quantum chemistry, machine learning, and software engineering to create practical solutions for synthetic and computational chemists worldwide.

Our work focuses on:

  • 🧪 Reaction Mechanism - Accurate free energy calculations and energy profiles
  • 🎯 Molecular Descriptors - Quantifying molecular shape and sterics
  • 🤖 Machine Learning - Deep learning for chemical property prediction
  • 🛠️ Open-Source Tools - Building accessible software for the chemistry community

🛠️ Technologies & Tools

Python JavaScript TensorFlow NumPy Jupyter

Quantum Chemistry: Gaussian • ORCA • Q-Chem • Psi4
Machine Learning: TensorFlow • PyTorch • scikit-learn
Development: Git • GitHub Actions • Docker • Conda


🤝 Collaboration & Contribution

We welcome contributions and collaborations!

  • 💡 Have an idea? Open an issue on the relevant repository
  • 🐛 Found a bug? Submit a pull request with a fix
  • 🔬 Research collaboration? Contact us through our lab website
  • Like our work? Star our repositories and share with colleagues

Contributing Guidelines

  1. Fork the repository you're interested in
  2. Create a feature branch (git checkout -b feature/AmazingFeature)
  3. Commit your changes with clear messages
  4. Push to your branch and open a Pull Request
  5. We'll review and provide feedback

All contributions, no matter how small, are valued and appreciated! 🙏


📚 Recent Publications & Resources

Stay updated with our latest research and developments:


📫 Get in Touch

Interested in computational chemistry tools or potential collaboration?

Website Email Twitter


⭐ If you find our work useful, please consider starring our repositories! ⭐

Accelerating chemical discovery through computational innovation

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  1. GoodVibes GoodVibes Public

    Calculate quasi-harmonic free energies from Gaussian output files with temperature and other corrections

    Python 153 54

  2. CASCADE CASCADE Public

    CAlculation of NMR Chemical Shifts using Deep LEarning

    JavaScript 61 18

  3. pyQRC pyQRC Public

    Quick Reaction Coordinate using Python

    Python 39 16

  4. DBSTEP DBSTEP Public

    DBSTEP: DFT-based Steric Parameters - python-based tool to extract molecular shape and steric descriptors from essentially any structure format

    Python 55 11

  5. Kinisot Kinisot Public

    Compute Kinetic Isotope Effects using the Bigeleisen-Mayer equation

    Python 23 5

  6. aqme aqme Public

    Forked from jvalegre/aqme

    Automated Quantum Mechanical Environments (AQME): The code is an ensemble of automated QM workflows, including: 1) RDKit- and CREST-based conformer generator and ready-to-submit QM input files star…

    Python 8

Repositories

Showing 10 of 19 repositories
  • .github Public
    patonlab/.github’s past year of commit activity
    0 0 0 0 Updated Jan 8, 2026
  • molDscript Public

    molDscript: A General-Purpose Workflow for Quantum Chemistry-Based Molecular Parameterization

    patonlab/molDscript’s past year of commit activity
    Python 4 MIT 0 0 1 Updated Dec 18, 2025
  • GoodVibes Public

    Calculate quasi-harmonic free energies from Gaussian output files with temperature and other corrections

    patonlab/GoodVibes’s past year of commit activity
    Python 153 MIT 54 15 2 Updated Nov 19, 2025
  • Sterimol Public

    Calculate Sterimol Parameters from Sructure Input/Output Files

    patonlab/Sterimol’s past year of commit activity
    Python 24 MIT 8 0 2 Updated Jun 2, 2025
  • DvTE Public

    Workflow and protocol for computing dynamic vertical triplet energies (DvTEs)

    patonlab/DvTE’s past year of commit activity
    Jupyter Notebook 1 MIT 0 0 0 Updated Nov 19, 2024
  • DBSTEP Public

    DBSTEP: DFT-based Steric Parameters - python-based tool to extract molecular shape and steric descriptors from essentially any structure format

    patonlab/DBSTEP’s past year of commit activity
    Python 55 MIT 11 3 0 Updated Nov 5, 2024
  • molcomplex Public

    Command line and webapp for retrosynthetic disconnections, molecular complexity and synthetic accessibility metrics

    patonlab/molcomplex’s past year of commit activity
    Roff 18 MIT 2 0 0 Updated Aug 14, 2024
  • pyQRC Public

    Quick Reaction Coordinate using Python

    patonlab/pyQRC’s past year of commit activity
    Python 39 MIT 16 0 0 Updated Jun 23, 2024
  • aqme Public Forked from jvalegre/aqme

    Automated Quantum Mechanical Environments (AQME): The code is an ensemble of automated QM workflows, including: 1) RDKit- and CREST-based conformer generator and ready-to-submit QM input files starting from individual files or databases, 2) post-processing of QM output files to fix extra imaginary frequencies, unfinished jobs and error terminati…

    patonlab/aqme’s past year of commit activity
    Python 8 MIT 28 0 0 Updated Jun 23, 2024
  • Kinisot Public

    Compute Kinetic Isotope Effects using the Bigeleisen-Mayer equation

    patonlab/Kinisot’s past year of commit activity
    Python 23 MIT 5 1 0 Updated Dec 19, 2023