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@systemsmedicine Systems Medicine of Infectious Diseases

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    19 repositories

    • qualitativeDE

      Public
      GPU Differential Evolution with qualitative constraint
      Jupyter Notebook
      •1•0•0•0•Updated Jan 21, 2025Jan 21, 2025

    • networkEpi

      Public
      Methodology for Developing Social networks models for epidemiological studies in Python
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated May 15, 2024May 15, 2024

    • covid-network

      Public
      Stochastic network modeling to quantify SARS-CoV-2 co-evolution
      C++
      •
      MIT License
      •1•1•0•0•Updated May 15, 2024May 15, 2024

    • Tcells_effect_influenza

      Public
      For the paper "Modeling the CD8+ T cell immune response to influenza infection in adult and aged mice"
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated May 6, 2024May 6, 2024

    • Tracking_IAV_from_Blood

      Public
      Tracking influenza with machine learning
      Python
      •1•0•0•0•Updated Sep 29, 2022Sep 29, 2022

    • SARS-CoV-2-Analysis-with-Mapper-Algorithm

      Public
      The shape of immunity in SARS-CoV-2
      Jupyter Notebook
      •1•0•0•0•Updated Feb 4, 2022Feb 4, 2022

    • COVID-19-Network-Model

      Public
      COVID-19 Network Model to Evaluate Vaccine Strategies towards Herd Immunity
      Jupyter Notebook
      •1•2•0•0•Updated Sep 10, 2021Sep 10, 2021

    • COVID19

      Public
      Python
      •1•0•0•0•Updated Sep 2, 2020Sep 2, 2020

    • Antibody_cross-reaction_dynamics

      Public
      Code for project testing/simulation platform
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 7, 2020Aug 7, 2020

    • Supermarket-environment-for-COVID-19-mitigation

      Public
      Testing platform for COVID-19 mitigation policies in small supermarkets
      Python
      •
      MIT License
      •1•0•0•0•Updated Aug 6, 2020Aug 6, 2020

    • PDE_params

      Public
      Parameter estimation for PDEs
      Python
      •
      MIT License
      •6•10•0•0•Updated Sep 12, 2019Sep 12, 2019

    • influenza_coinfection_TDA

      Public
      Accompanying code for paper studying influenza co-infection using TDA
      Jupyter Notebook
      •1•0•0•0•Updated Jun 17, 2019Jun 17, 2019

    • Discrete-decay-and-Half-life

      Public
      Discrete-time approach for decay with a certain half-life
      Python
      •
      MIT License
      •1•0•0•0•Updated Mar 4, 2019Mar 4, 2019

    • neuraminidase-inhibitors

      Public
      Within- and between-host effects of NAIs against influenza infection
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Feb 27, 2019Feb 27, 2019

    • adjuvanted-vaccine

      Public
      Mathematical model of adjuvanted vaccine dynamics
      Jupyter Notebook
      •
      MIT License
      •2•1•0•0•Updated Feb 27, 2019Feb 27, 2019

    • geographical-chemotypes

      Public
      Classification of bacterial metabolite data obtained from soil samples into corresponding to Photorhabdus or Xenorhabdus
      Jupyter Notebook
      •
      MIT License
      •1•0•0•0•Updated Feb 27, 2019Feb 27, 2019

    • Book-Modeling-and-Control-of-Infectious-Diseases-in-the-Host

      Public
      Modeling and Control of Infectious Diseases in the Host with MATLAB and R
      MATLAB
      •
      Apache License 2.0
      •0•6•0•0•Updated Feb 27, 2019Feb 27, 2019

    • plague2017

      Public
      Data and R code
      Jupyter Notebook
      •0•1•0•0•Updated Oct 3, 2018Oct 3, 2018

    • antivir2017

      Public
      Supplemental simulation code for the paper [link to bioarix]
      R
      •
      MIT License
      •0•1•0•0•Updated Dec 20, 2017Dec 20, 2017