Repositories list

• NCBI-HCV-GLUE

  Public
  Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.

  bioinformaticsmicrobial-genomicsviral-genomics+ 5bioinformatics-databasesantiviral-resistancehepatitis-cvirus-evolutionvirus-genomes

  JavaScript

  •0•0•0•0•Updated Dec 11, 2024Dec 11, 2024

• Lentivirus-GLUE-Primates

  Public
  Extension to Lentivirus-GLUE - adds all published primate lentivirus data from NCBI

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• Lentivirus-GLUE-SRLV

  Public
  Extension to Lentivirus-GLUE - adds all published small ruminant lentivirus data from NCBI, plus analysis logic

  JavaScript

  •0•0•0•0•Updated Dec 10, 2024Dec 10, 2024

• Lentivirus-GLUE

  Public
  A GLUE project for Lentiviruses (genus Lentivirus)

  comparative-genomicssequence-analysisretrovirus+ 2virus-evolutionpaleovirology

  JavaScript

  •0•0•0•0•Updated Dec 8, 2024Dec 8, 2024

• RVdb

  Public
  A GLUE project for retroviruses (family Retroviridae)

  JavaScript

  •0•0•0•0•Updated Dec 7, 2024Dec 7, 2024

• Lentivirus-GLUE-FIV

  Public
  Extension to Lentivirus-GLUE - contains all published feline lentivirus data from NCBI

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Dec 7, 2024Dec 7, 2024

• Lentivirus-GLUE-EIAV

  Public
  Extension to Lentivirus-GLUE - contains all published EIAV data from NCBI

  JavaScript

  •0•0•0•0•Updated Dec 7, 2024Dec 7, 2024

• IFNL-Evolution

  Public
  Resources supporting comparative and phylogenetic analysis of IFNL genes

  reproducible-researchgluecomparative-genomics+ 3molecular-biologyimmunityinterferon

  JavaScript

  •0•0•0•0•Updated Dec 4, 2024Dec 4, 2024

• .github

  Public
  Organisation overview

  0•0•0•0•Updated Dec 3, 2024Dec 3, 2024

• Deltaretrovirus-GLUE

  Public
  A GLUE project for Deltaretroviruses

  reproducible-researchgluecomparative-genomics+ 4bioinformatics-databasessequence-analysisretrovirusvirus-evolution

  JavaScript

  •0•0•0•0•Updated Dec 1, 2024Dec 1, 2024

• Dengue-GLUE

  Public
  A GLUE project for dengue virus (DENV)

  JavaScript

  •0•0•0•0•Updated Nov 30, 2024Nov 30, 2024

• DIGS-for-EVEs

  Public
  An organised catalog of endogenous viral element (EVE) sequences identified via database-integrated genome screening (DIGS).

  genomicsevolutionvirology+ 1paleovirology

  Perl

  •0•0•0•0•Updated Nov 28, 2024Nov 28, 2024

• RABV-GLUE

  Public
  A GLUE project for Rabies Virus (RABV).

  glueepidemiologysequence-analysis+ 3rabiesvirus-evolutiongenomic-epidemiology

  JavaScript

  •0•1•0•0•Updated Nov 28, 2024Nov 28, 2024

• CHIKV-GLUE

  Public
  A GLUE project for chikungunya virus (CHIKV)

  JavaScript

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• Parvovirus-GLUE

  Public
  A GLUE project for comparative genomic analysis of parvoviruses

  reproducible-researchglueopen-science+ 6comparative-genomicsaavgene-therapyvirus-evolutionpaleovirologyparvovirus

  JavaScript

  •0•1•0•0•Updated Nov 27, 2024Nov 27, 2024

• CRESS-GLUE

  Public
  A GLUE project for comparative genomic analysis of circular Rep-encoding single-stranded DNA (CRESS DNA) viruses

  reproducible-researchgluemetagenomics+ 3microbial-genomicscomparative-genomicsvirus-evolution

  JavaScript

  •0•0•0•0•Updated Nov 27, 2024Nov 27, 2024

• HCV-GLUE

  Public
  A GLUE project for Hepatitis C virus (HCV)

  dockerbioinformatics-databasesdrug-resistance+ 4antiviral-resistancehepatitis-cvirus-evolutionvirus-genomes

  F*

  •0•1•1•0•Updated Nov 27, 2024Nov 27, 2024

• Flavivirus-GLUE

  Public
  A GLUE project for comparative genomic analysis of flaviviruses

  bioinformaticsreproducible-researchglue+ 5open-sciencecomparative-genomicsvirus-evolutionflaviviruspaleovirology

  JavaScript

  •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

• HEV-GLUE

  Public
  A GLUE project for Hepatitis E Virus (HEV)

  glueopen-scienceepidemiology+ 4comparative-genomicshepatitismicrobial-evolutionvirus-evolution

  HTML

  •0•0•0•0•Updated Nov 26, 2024Nov 26, 2024

• Flu-GLUE

  Public
  A GLUE project for influenzaviruses

  Perl

  •

  GNU General Public License v3.0

  •0•1•0•0•Updated Nov 26, 2024Nov 26, 2024

• WNV-GLUE

  Public
  A GLUE project for West Nile virus (WNV)

  JavaScript

  •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• Lentivirus-GLUE-ERV

  Public
  Extension to Lentivirus-GLUE - adds endogenous lentivirus sequence data

  JavaScript

  •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• Lentivirus-GLUE-Bovine

  Public
  Extension to Lentivirus-GLUE - contains all published bovine lentivirus data from NCBI

  JavaScript

  •

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 25, 2024Nov 25, 2024

• gluetools

  Public
  An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

  genomicsreproducible-researchmicrobial-genomics+ 3comparative-genomicssequence-analysisvirus-evolution

  Java

  •2•12•1•0•Updated Nov 25, 2024Nov 25, 2024

• HBV-GLUE

  Public
  A GLUE project for hepatitis B virus (HBV).

  bioinformaticsgenomicshepatitis+ 5drug-resistancesequence-analysissequence-annotationvirus-evolutiongenomics-analysis

  JavaScript

  •1•1•0•0•Updated Nov 21, 2024Nov 21, 2024

• Parvovirus-GLUE-EVE

  Public
  Extension to Parvovirus-GLUE - incorporates endogenous parvoviral elements (EPVs)

  JavaScript

  •0•0•0•0•Updated Nov 21, 2024Nov 21, 2024

• NCBI-Dengue-GLUE

  Public
  Extension to Dengue-GLUE - adds all published DENV data from NCBI.

  JavaScript

  •0•0•0•0•Updated Nov 6, 2024Nov 6, 2024

• A3-Evolution

  Public
  Resources supporting comparative and phylogenetic analysis of APOBEC3 genes

  Python

  •2•1•0•1•Updated Nov 3, 2024Nov 3, 2024

• BTV-GLUE

  Public
  A GLUE project for Bluetongue Virus

  glueepidemiologymicrobial-genomics+ 4veterinarycomparative-genomicsmicrobial-evolutionvirus-evolution

  JavaScript

  •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024

• Lassa-GLUE

  Public
  A GLUE project for Lassa virus

  JavaScript

  •0•0•0•0•Updated Nov 1, 2024Nov 1, 2024