Repositories list

• noctua-models

  Public
  This is the data repository for the models created and edited with the Noctua tool stack for GO.

  annotationpathwaysgeneontology+ 3noctua-modelsgo-camontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •3•10•35•2•Updated Oct 31, 2024Oct 31, 2024

• go-ontology

  Public
  Source ontology files for the Gene Ontology

  goowlgene-ontology+ 5obogeneontologyfunctional-annotationobofoundryontology

  Makefile

  •

  Creative Commons Attribution 4.0 International

  •40•222•733•48•Updated Oct 31, 2024Oct 31, 2024

• go-annotation

  Public
  This repository hosts the tracker for issues pertaining to GO annotations.

  ontologygenescuration+ 4geneontologyfunctional-annotationannotationannotations

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •10•34•349•2•Updated Oct 30, 2024Oct 30, 2024

• noctua_app_stack

  Public
  geneontologynoctuanoctua-models

  HCL

  •1•0•4•0•Updated Oct 30, 2024Oct 30, 2024

• geneontology.github.io

  Public
  Repository for storing GO documentation, directly available through the general GO site

  documentationgeneontologygithubio

  SCSS

  •

  MIT License

  •10•6•24•15•Updated Oct 29, 2024Oct 29, 2024

• go-site

  Public
  A collection of metadata, tools, and files associated with the Gene Ontology public web presence.

  documentationgene-ontologygeneontology+ 2yamlmetadata

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •89•46•252•43•Updated Oct 29, 2024Oct 29, 2024

• pipeline

  Public
  Declarative pipeline for the Gene Ontology.

  geneontologypipeline

  BSD 3-Clause "New" or "Revised" License

  •5•5•91•2•Updated Oct 26, 2024Oct 26, 2024

• neo

  Public
  noctua entity ontology

  annotationobogeneontology+ 3gafgo-camontology

  Perl

  •2•9•30•4•Updated Oct 26, 2024Oct 26, 2024

• reactome-go-cams

  Public
  A set of GO-CAMs built automatically from Reactome pathways.

  pathwaysreactomegeneontology+ 3reactome-pathwaynoctua-modelsgo-cam

  0•1•2•1•Updated Oct 24, 2024Oct 24, 2024

• devops-documentation

  Public
  General and specific documentation for geneontology DevOps

  BSD 3-Clause "New" or "Revised" License

  •1•0•4•0•Updated Oct 24, 2024Oct 24, 2024

• go-fastapi

  Public
  Python

  •3•5•5•1•Updated Oct 23, 2024Oct 23, 2024

• PAN-GO_CAFA_evaluation

  Public
  Contains code and data used to perform CAFA evaluation of PAN-GO data

  Perl

  •0•0•0•0•Updated Oct 14, 2024Oct 14, 2024

• gocam-py

  Public
  Draft data model for GO-CAMs

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•3•1•Updated Oct 9, 2024Oct 9, 2024

• noctua-form-base

  Public
  librarygeneontologygo-cam+ 1annotations

  TypeScript

  •1•0•0•0•Updated Oct 8, 2024Oct 8, 2024

• noctua-landing-page

  Public
  geneontologynoctuanoctua-models+ 1go-cam

  TypeScript

  •0•1•18•8•Updated Oct 8, 2024Oct 8, 2024

• obographs

  Public
  Basic and Advanced OBO Graphs: specification and reference implementation

  jsongraphsowl+ 6gene-ontologyontologiesgeneontologyobofoundryontology-standardsontology

  Java

  •12•64•50•1•Updated Oct 3, 2024Oct 3, 2024

• noctua-models-migrations

  Public
  Migration, change, update metadata for noctua-models

  Ruby

  •0•0•1•0•Updated Oct 2, 2024Oct 2, 2024

• pathways2GO

  Public
  Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)

  pathwaysgeneontologybiopax+ 2go-camontology

  Java

  •0•8•96•1•Updated Oct 1, 2024Oct 1, 2024

• noctua-standard-annotations

  Public
  TypeScript

  •0•0•17•0•Updated Sep 25, 2024Sep 25, 2024

• gopreprocess

  Public
  Python

  •

  MIT License

  •1•3•1•0•Updated Sep 19, 2024Sep 19, 2024

• wc-gocam-viz

  Public
  Web component to visualize GO-CAMs

  geneontologygo-cam

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •2•2•16•0•Updated Sep 12, 2024Sep 12, 2024

• minerva

  Public
  geneontologygafnoctua+ 2noctua-modelsconverter

  Java

  •

  BSD 3-Clause "New" or "Revised" License

  •8•6•61•9•Updated Sep 12, 2024Sep 12, 2024

• sparql-for-pathway-go-cams

  Public
  SPARQL queries and pipeline for filtering "pathway-like" GO-CAM models and packaging into tarball

  Makefile

  •0•0•1•0•Updated Sep 9, 2024Sep 9, 2024

• go-shapes

  Public
  Schema for Gene Ontology Causal Activity Models defined using RDF Shapes

  shexgeneontologynoctua+ 4noctua-modelsgo-camowlontology

  Shell

  •0•2•40•7•Updated Aug 23, 2024Aug 23, 2024

• gaferencer

  Public
  Perform annotation deepening and satisfiability checking for GO annotations in GAFs

  ontologygeneontologyfunctional-annotation+ 2gafannotation

  Scala

  •

  MIT License

  •1•0•3•12•Updated Aug 12, 2024Aug 12, 2024

• web-gocam

  Public
  GO-CAM site as an Angular 2+ Application

  annotationsgeneontologynoctua+ 2noctua-modelsgo-cam

  TypeScript

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•11•0•Updated Jul 12, 2024Jul 12, 2024

• commons-rdf

  Public
  Apache Commons RDF

  Java

  •

  Apache License 2.0

  •42•0•0•0•Updated Jul 12, 2024Jul 12, 2024

• amigo

  Public
  AmiGO is the public interface for the Gene Ontology.

  browserannotationsontology+ 3genesgeneontologyfunctional-annotation

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •17•29•174•25•Updated Jun 19, 2024Jun 19, 2024

• noctua-alliance-pathway-preview

  Public
  TypeScript

  •0•0•6•0•Updated Jun 5, 2024Jun 5, 2024

• shared-annotation-check

  Public
  Tools and data for intersections/co-annotation checks in the Gene Ontology.

  geneontology

  JavaScript

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•5•0•Updated May 6, 2024May 6, 2024