The Gene Ontology Consortium

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124 repositories

go-ontology
Public
Source ontology files for the Gene Ontology
go owl gene-ontology obo geneontology functional-annotation obofoundry ontology
Makefile
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Creative Commons Attribution 4.0 International
•40•223•745•51•Updated Dec 1, 2024Dec 1, 2024
noctua-models
Public
This is the data repository for the models created and edited with the Noctua tool stack for GO.
annotation pathways geneontology noctua-models go-cam ontology
Makefile
•
Creative Commons Attribution 4.0 International
•3•10•35•2•Updated Nov 30, 2024Nov 30, 2024
geneontology.github.io
Public
Repository for storing GO documentation, directly available through the general GO site
documentation geneontology githubio
SCSS
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MIT License
•10•7•27•12•Updated Nov 29, 2024Nov 29, 2024
go-annotation
Public
This repository hosts the tracker for issues pertaining to GO annotations.
ontology genes curation geneontology functional-annotation annotation annotations
Python
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BSD 3-Clause "New" or "Revised" License
•10•35•394•2•Updated Nov 29, 2024Nov 29, 2024
pipeline-from-goa
Public
The new GO pipeline that runs after GOA has made QC file products available.
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Nov 27, 2024Nov 27, 2024
go-fastapi
Public
Python
•3•6•4•1•Updated Nov 27, 2024Nov 27, 2024
gocam-py
Public
Draft data model for GO-CAMs
Python
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BSD 3-Clause "New" or "Revised" License
•0•0•3•1•Updated Nov 25, 2024Nov 25, 2024
noctua-alliance-pathway-preview
Public
TypeScript
•0•0•5•0•Updated Nov 23, 2024Nov 23, 2024
wc-gocam-viz
Public
Web component to visualize GO-CAMs
geneontology go-cam
TypeScript
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BSD 3-Clause "New" or "Revised" License
•2•2•17•0•Updated Nov 22, 2024Nov 22, 2024
web-components
Public
EXPERIMENTAL Unified web component library
TypeScript
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BSD 3-Clause "New" or "Revised" License
•0•0•1•0•Updated Nov 22, 2024Nov 22, 2024
pathways2GO
Public
Code for converting between BioPAX pathways and Gene Ontology Causal Activity Models (GO-CAM)
pathways geneontology biopax go-cam ontology
Java
•0•9•104•0•Updated Nov 22, 2024Nov 22, 2024
noctua_app_stack
Public
geneontology noctua noctua-models
HCL
•1•0•6•1•Updated Nov 20, 2024Nov 20, 2024
go-site
Public
A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
documentation gene-ontology geneontology yaml metadata
JavaScript
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BSD 3-Clause "New" or "Revised" License
•89•46•252•44•Updated Nov 20, 2024Nov 20, 2024
project-management
Public
Tracking project metadata in the GO as issues.
0•2•65•0•Updated Nov 18, 2024Nov 18, 2024
noctua-standard-annotations
Public
TypeScript
•0•0•16•0•Updated Nov 15, 2024Nov 15, 2024
wc-ribbon
Public
This repository contains a collection of web components, initially centered on the GO ribbon, a UI tool to visualize a summary of annotations for gene and gene sets.
go data ui web component annotation ribbon association geneontology
TypeScript
•2•2•17•6•Updated Nov 15, 2024Nov 15, 2024
noctua-form-base
Public
library geneontology go-cam annotations
TypeScript
•1•0•0•0•Updated Nov 12, 2024Nov 12, 2024
minerva
Public
geneontology gaf noctua noctua-models converter
Java
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BSD 3-Clause "New" or "Revised" License
•8•6•61•9•Updated Nov 7, 2024Nov 7, 2024
reactome-go-cams
Public
A set of GO-CAMs built automatically from Reactome pathways.
pathways reactome geneontology reactome-pathway noctua-models go-cam
0•1•2•1•Updated Nov 5, 2024Nov 5, 2024
pipeline
Public
Declarative pipeline for the Gene Ontology.
geneontology pipeline
BSD 3-Clause "New" or "Revised" License
•5•5•87•2•Updated Oct 26, 2024Oct 26, 2024
neo
Public
noctua entity ontology
annotation obo geneontology gaf go-cam ontology
Perl
•2•9•30•4•Updated Oct 26, 2024Oct 26, 2024
devops-documentation
Public
General and specific documentation for geneontology DevOps
BSD 3-Clause "New" or "Revised" License
•1•0•4•0•Updated Oct 24, 2024Oct 24, 2024
PAN-GO_CAFA_evaluation
Public
Contains code and data used to perform CAFA evaluation of PAN-GO data
Perl
•0•0•0•0•Updated Oct 14, 2024Oct 14, 2024
noctua-landing-page
Public
geneontology noctua noctua-models go-cam
TypeScript
•0•1•20•8•Updated Oct 8, 2024Oct 8, 2024
obographs
Public
Basic and Advanced OBO Graphs: specification and reference implementation
json graphs owl gene-ontology ontologies geneontology obofoundry ontology-standards ontology
Java
•12•64•50•1•Updated Oct 3, 2024Oct 3, 2024
noctua-models-migrations
Public
Migration, change, update metadata for noctua-models
Ruby
•0•0•1•0•Updated Oct 2, 2024Oct 2, 2024
gopreprocess
Public
Python
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MIT License
•1•3•1•0•Updated Sep 19, 2024Sep 19, 2024
sparql-for-pathway-go-cams
Public
SPARQL queries and pipeline for filtering "pathway-like" GO-CAM models and packaging into tarball
Makefile
•0•0•1•0•Updated Sep 9, 2024Sep 9, 2024
go-shapes
Public
Schema for Gene Ontology Causal Activity Models defined using RDF Shapes
shex geneontology noctua noctua-models go-cam owl ontology
Shell
•0•2•40•7•Updated Aug 23, 2024Aug 23, 2024
gaferencer
Public
Perform annotation deepening and satisfiability checking for GO annotations in GAFs
ontology geneontology functional-annotation gaf annotation
Scala
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MIT License
•1•0•3•12•Updated Aug 12, 2024Aug 12, 2024