Repositories list

• NR_modulated_whole-brain_computation_captures_full_task-repertoire

  Public
  This repository includes the matlab scripts generating the findings in the ms entitled: "Neurotransmission modulated whole-brain computation captures full task…

  MATLAB

  •0•0•0•0•Updated Nov 27, 2025Nov 27, 2025

• restoring-signatures-individual-WBM

  Public
  Repository containing the code for the simulations and figures of the paper "Restoring signatures of consciousness by individual whole-brain modelling central t…

  GNU General Public License v3.0

  •0•0•0•0•Updated Nov 7, 2025Nov 7, 2025

• TTB_modellingvortexinteraction

  Public
  This repository includes the codes for replicate the ms entitle: "The turbulent brain: Modelling vortex interactions for understanding human cognition"

  MATLAB

  •0•1•0•0•Updated Sep 24, 2025Sep 24, 2025

• gec

  Public
  MATLAB

  •

  Other

  •0•5•0•0•Updated Jun 27, 2025Jun 27, 2025

• avilavarela_menstrualcycle_ignition

  Public
  MATLAB

  •

  MIT License

  •1•0•0•0•Updated Jun 27, 2025Jun 27, 2025

• dagnino_awakening_coma

  Public
  MATLAB

  •

  Other

  •2•1•0•0•Updated Jun 27, 2025Jun 27, 2025

• martinezmolina_TBI_turbu_les_Hopf

  Public
  MATLAB

  •

  MIT License

  •1•0•0•0•Updated Jun 27, 2025Jun 27, 2025

• GABIC

  Public
  Code for paper Deco et al in Nature Human Behaviour 2021

  MATLAB

  •

  Other

  •4•0•0•0•Updated Jun 27, 2025Jun 27, 2025

• patow_abeta_tau_brainmodel

  Public
  Python

  •

  Other

  •0•0•0•0•Updated Jun 27, 2025Jun 27, 2025

• fastDMF

  Public
  C++

  •

  BSD 3-Clause "New" or "Revised" License

  •1•0•0•0•Updated Jun 27, 2025Jun 27, 2025

• NonLocalDiffModel

  Public
  This repository includes the codes for replicate the ms entitle: "Non-local Schrödinger diffusion model reveals mechanisms of critical brain dynamics"

  MATLAB

  •0•0•0•0•Updated Apr 28, 2025Apr 28, 2025

• charm

  Public
  MATLAB

  •0•2•0•0•Updated Jun 28, 2024Jun 28, 2024

• Psilodep2

  Public
  MATLAB

  •0•0•0•0•Updated Feb 16, 2024Feb 16, 2024

• pnas-neuromod

  Public
  Code for paper in PNAS 2020

  MATLAB

  •

  MIT License

  •3•15•0•0•Updated Nov 17, 2023Nov 17, 2023

• megturbulence

  Public
  MATLAB

  •0•1•0•0•Updated Apr 14, 2023Apr 14, 2023

• Effective-Connectivity--Hopf

  Public
  A Hopf oscillator-based method for estimating effective connectivity. Uses the particle swarm algorithm to fit the model. Groups of effective connectivity est…

  MATLAB

  •1•6•0•0•Updated Jun 2, 2022Jun 2, 2022

• Functions

  Public
  This repository contains functions necessary for the LEICA and Effective Connectivity: Hopf respositories' function.

  MATLAB

  •0•2•0•0•Updated Jun 2, 2022Jun 2, 2022

• LEICA

  Public
  This respository contains the most up-to-date version of the LEICA (Leading Eigenvector Independent Component Analysis)

  MATLAB

  •1•3•0•0•Updated Jun 2, 2022Jun 2, 2022

• insideout

  Public
  Code for Deco et al paper in Communications Biology

  MATLAB

  •

  Creative Commons Zero v1.0 Universal

  •2•4•0•0•Updated May 18, 2022May 18, 2022

• Hopf_consciousness

  Public
  MATLAB

  •

  MIT License

  •4•3•1•0•Updated Feb 28, 2022Feb 28, 2022

• cb-longrange

  Public
  Shell

  •1•2•0•0•Updated Jul 1, 2021Jul 1, 2021

• pyGAlib

  Public
  Graph Analisys library based on Python / NumPy

  Python

  •

  Other

  •12•0•0•0•Updated Feb 24, 2021Feb 24, 2021

• cr-turbulence

  Public
  Code for paper in Cell Reports 2020

  MATLAB

  •4•4•0•0•Updated Dec 23, 2020Dec 23, 2020

• pyMOU

  Public
  Light package for connectivity estimation and analysis of neuroimaging data (e.g. fMRI). It relies on the multivariate Ornstein-Uhlenbeck process (MOU).

  Python

  •

  Apache License 2.0

  •5•0•0•0•Updated Nov 5, 2019Nov 5, 2019

• cb-neuromod

  Public
  Code for Deco et al 2018 Current Biology

  MATLAB

  •3•7•0•0•Updated Jul 30, 2018Jul 30, 2018