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@OHDSI Observational Health Data Sciences and Informatics

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    310 repositories

    • dbt-synthea

      Public
      [Under development] A dbt ETL project to convert a Synthea synthetic data set into the OMOP CDM
      Python
      •
      Apache License 2.0
      •6•16•18•2•Updated Nov 23, 2024Nov 23, 2024

    • OhdsiShinyModules

      Public
      An R package containing Shiny modules used by various OHDSI Shiny apps
      R
      •11•8•54•4•Updated Nov 22, 2024Nov 22, 2024

    • ShinyAppBuilder

      Public
      Create shiny apps using modules from OhdsiShinyModules or custom modules
      R
      •2•6•5•2•Updated Nov 22, 2024Nov 22, 2024

    • ReportGenerator

      Public
      A package that creates friendly report from results saved in an OHDSI standardized result database
      R
      •0•0•0•0•Updated Nov 22, 2024Nov 22, 2024

    • WebAPI

      Public
      OHDSI WebAPI contains all OHDSI services that can be called from OHDSI applications
      Java
      •
      Apache License 2.0
      •169•130•134•26•Updated Nov 22, 2024Nov 22, 2024

    • Vocabulary-v5.0

      Public
      Build process for the OHDSI Standardized Vocabularies. Currently not available as independent release.
      PLpgSQL
      •
      The Unlicense
      •75•222•217•12•Updated Nov 22, 2024Nov 22, 2024

    • ETL-LambdaBuilder

      Public
      CDM Builder leveraging AWS Lambda
      C#
      •
      Apache License 2.0
      •14•14•1•2•Updated Nov 22, 2024Nov 22, 2024

    • Ulysses

      Public
      Ulysses is an R package that automates setup of an OHDSI study and provides functions to assist with its maintenance and organization.
      R
      •
      Apache License 2.0
      •3•2•7•0•Updated Nov 21, 2024Nov 21, 2024

    • DeepPatientLevelPrediction

      Public
      An R package for performing patient level prediction using deep learning in an observational database in the OMOP Common Data Model.
      hadesdeep-learning
      R
      •4•12•20•2•Updated Nov 21, 2024Nov 21, 2024

    • Atlas

      Public
      ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data
      JavaScript
      •
      Apache License 2.0
      •137•273•215•21•Updated Nov 21, 2024Nov 21, 2024

    • ArachneExecutionEngine

      Public
      Arachne Execution Engine is a component used to execute remote SQL or R code. It is used by both Arachne Data Node as well as WebAPI
      PLpgSQL
      •8•8•2•2•Updated Nov 21, 2024Nov 21, 2024

    • PatientLevelPrediction

      Public
      An R package for performing patient level prediction in an observational database in the OMOP Common Data Model.
      hades
      HTML
      •89•188•68•2•Updated Nov 21, 2024Nov 21, 2024

    • EvidenceNetwork

      Public
      Apache License 2.0
      •0•0•8•0•Updated Nov 21, 2024Nov 21, 2024

    • OmopSketch

      Public
      R
      •
      Apache License 2.0
      •0•1•24•1•Updated Nov 21, 2024Nov 21, 2024

    • PhenotypeR

      Public
      R
      •
      Apache License 2.0
      •0•1•19•0•Updated Nov 21, 2024Nov 21, 2024

    • LocalControl

      Public
      An R Package for Generating High Quality Comparative Effectiveness Evidence
      R
      •
      Apache License 2.0
      •2•1•1•0•Updated Nov 20, 2024Nov 20, 2024

    • OmopViewer

      Public
      R
      •
      Apache License 2.0
      •0•2•17•0•Updated Nov 19, 2024Nov 19, 2024

    • ConceptSetDiagnostics

      Public
      Package to assist with design diagnostics for concept set
      R
      •
      Other
      •1•0•1•0•Updated Nov 18, 2024Nov 18, 2024

    • gaiaCore

      Public
      An R Package for interacting with gaiaDB - part of the OHDSI GIS Gaia toolchain
      R
      •
      Apache License 2.0
      •0•2•0•0•Updated Nov 18, 2024Nov 18, 2024

    • MethodEvaluation

      Public
      An R package for the evaluation of estimation methods
      hades
      R
      •5•7•2•0•Updated Nov 18, 2024Nov 18, 2024

    • CohortSymmetry

      Public
      R
      •
      Apache License 2.0
      •0•1•22•0•Updated Nov 15, 2024Nov 15, 2024

    • Broadsea-Dbt

      Public
      A Docker container for the open source Data Build Tool
      Dockerfile
      •
      Apache License 2.0
      •1•2•2•0•Updated Nov 15, 2024Nov 15, 2024

    • SelfControlledCaseSeries

      Public
      An R package for performing Self-Controlled Case Series (SCCS) analyses in an observational database in the OMOP Common Data Model.
      hades
      R
      •8•13•11•0•Updated Nov 14, 2024Nov 14, 2024

    • Broadsea-Atlasdb

      Public
      A Postgresql database in a Docker container for OHDSI Atlas/WebAPI
      Dockerfile
      •
      Apache License 2.0
      •4•2•1•0•Updated Nov 14, 2024Nov 14, 2024

    • CohortGenerator

      Public
      Cohort Generation for the OMOP Common Data Model
      hades
      R
      •10•12•19•4•Updated Nov 14, 2024Nov 14, 2024

    • EvidenceSynthesis

      Public
      An R package for combining evidence from multiple sources (e.g. multiple data sites)
      hades
      R
      •8•8•3•0•Updated Nov 13, 2024Nov 13, 2024

    • Strategus

      Public
      [Under development] An R packages for coordinating and executing analytics using HADES modules
      R
      •12•6•20•5•Updated Nov 13, 2024Nov 13, 2024

    • Arachne

      Public
      Arachne Data Node web application
      TypeScript
      •
      Apache License 2.0
      •1•1•10•2•Updated Nov 13, 2024Nov 13, 2024

    • Ares

      Public
      A Research Exploration System
      Vue
      •
      Apache License 2.0
      •7•12•36•3•Updated Nov 13, 2024Nov 13, 2024

    • CohortConstructor

      Public
      R
      •
      Apache License 2.0
      •0•1•32•3•Updated Nov 12, 2024Nov 12, 2024