Repositories list

• ProtPipe

  Public
  R

  •

  MIT License

  •2•6•0•0•Updated Feb 5, 2025Feb 5, 2025

• CARDlongread_meth_R.9vs10

  Public
  Comparison of methylation calling between ONT long-read R.9 and R.10 data

  Python

  •1•1•0•0•Updated Feb 4, 2025Feb 4, 2025

• CARDBiomedBench

  Public
  Python

  •

  Apache License 2.0

  •0•2•0•0•Updated Jan 20, 2025Jan 20, 2025

• cellPaintingAnnotation

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Jan 3, 2025Jan 3, 2025

• CARDlongread_NABEC_HBCC_QTL_manuscript

  Public
  Code repository for analysis performed on NABEC/HBCC ONT WGS data release, including QTL analysis workflows.

  Jupyter Notebook

  •1•2•0•0•Updated Dec 18, 2024Dec 18, 2024

• brain-taxonomy

  Public
  Tools and artifacts for the generic human brain tissue taxonomy for development of cell type assignment of single nuclei/cells from RNA seq experiments.

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•0•0•0•Updated Nov 7, 2024Nov 7, 2024

• ADRD-GeneticDiversity-Biobanks

  Public
  This is the online repository for the article titled "Biobank-scale characterization of Alzheimer’s disease and related dementias across diverse ancestries identifies risk, protective and resilient genetic variation linked to disease etiology".

  Jupyter Notebook

  •0•0•0•0•Updated Nov 5, 2024Nov 5, 2024

• Gut-Brain-Nexus

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Oct 20, 2024Oct 20, 2024

• Neurite-WT-RBP-KD

  Public
  R

  •

  MIT License

  •0•0•0•0•Updated Sep 17, 2024Sep 17, 2024

• scvi-multiome

  Public
  Snakemake Workflow for using SCVI on scMultiome Datasets

  Python

  •

  GNU General Public License v3.0

  •2•0•0•0•Updated Sep 4, 2024Sep 4, 2024

• V_Ryan_TDP43_meta_2024

  Public
  Jupyter Notebook

  •0•0•0•0•Updated Aug 5, 2024Aug 5, 2024

• brain_label8r

  Public
  0•0•0•0•Updated Jul 18, 2024Jul 18, 2024

• NDDsImagingStreamlitApp

  Public
  Source code for streamlit webapp https://ndds-brainimaging-ml.streamlit.app/

  Python

  •

  MIT License

  •0•0•0•1•Updated Jun 12, 2024Jun 12, 2024

• NDD_SMR

  Public
  Jupyter Notebook

  •

  GNU Affero General Public License v3.0

  •2•2•0•1•Updated May 15, 2024May 15, 2024

• NDD_x_sleep

  Public
  Repository for analyses exploring NDD and sleep disorder associations in a hypothesis free manner.

  Jupyter Notebook

  •0•0•0•0•Updated May 6, 2024May 6, 2024

• longread-report-parser

  Public
  Python

  •

  GNU General Public License v3.0

  •3•0•0•0•Updated Apr 23, 2024Apr 23, 2024

• ANXA11_novel_variant

  Public
  0•0•0•0•Updated Jan 31, 2024Jan 31, 2024

• proteogenomic-pipeline

  Public
  work under progress ...

  Shell

  •0•4•0•0•Updated Jan 10, 2024Jan 10, 2024

• NDDsImaging

  Public
  Jupyter Notebook

  •

  MIT License

  •0•0•0•0•Updated Dec 21, 2023Dec 21, 2023

• NDD_Single_Cell

  Public
  R

  •1•1•0•1•Updated Nov 7, 2023Nov 7, 2023

• LLM_Demo

  Public
  LLM Streamlit Demo

  Python

  •1•0•0•1•Updated Sep 22, 2023Sep 22, 2023

• MachineLearningForALS

  Public
  Python

  •2•0•0•0•Updated Jun 14, 2023Jun 14, 2023

• biomarker_longGWAS

  Public
  Longitudinal GWAS for CSF biomarkers in PD & AD

  Jupyter Notebook

  •0•0•0•0•Updated Jun 13, 2023Jun 13, 2023

• HAAS

  Public
  0•0•0•0•Updated May 30, 2023May 30, 2023

• Long-read-sequencing-README

  Public
  Shell

  •0•2•0•0•Updated May 12, 2023May 12, 2023

• MA_MA_meta

  Public
  Repository for CARD's ongoing multi-ancestry meta-analysis efforts.

  Jupyter Notebook

  •2•8•1•0•Updated Apr 26, 2023Apr 26, 2023

• AlignedUMAP-BiomedicalData

  Public
  Aligned-UMAP for longitudinal datasets analysis in biomedical research

  dimensionality-reductionlongitudinal-dataunsupervised-learning+ 2biomedical-data-sciencestreamlit-dashboard

  Jupyter Notebook

  •

  MIT License

  •3•3•0•0•Updated Apr 21, 2023Apr 21, 2023

• scOmicPipeline

  Public
  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •0•1•0•0•Updated Mar 30, 2023Mar 30, 2023

• NDD_virus

  Public
  Repository for pilot analyses exploring NDD and viral associations in a hypothesis free manner.

  Jupyter Notebook

  •1•1•0•0•Updated Dec 21, 2022Dec 21, 2022

• wf_single_cell_longread

  Public
  long read single cell analysis taken from https://github.com/epi2me-labs/wf-single-cell

  Nextflow

  •0•1•0•0•Updated Dec 20, 2022Dec 20, 2022