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    14 repositories

    • Macosko-Pipelines

      Public
      R
      •3•0•1•0•Updated Feb 2, 2026Feb 2, 2026

    • SynapseSeq_Analysis

      Public
      Jupyter Notebook
      •0•0•0•0•Updated Dec 27, 2025Dec 27, 2025

    • macosko-compute

      Public
      Shell
      •1•2•0•0•Updated Oct 23, 2025Oct 23, 2025

    • pknn_repo

      Public
      Jupyter Notebook
      •0•2•0•0•Updated Sep 24, 2025Sep 24, 2025

    • netprop-missense-prediction

      Public
      Predicting Transcriptomic Responses to Missense Mutations with Network Propagation Algorithms
      Jupyter Notebook
      •0•0•0•0•Updated Aug 22, 2025Aug 22, 2025

    • brain-atlas

      Public
      Scripts for analyzing brain atlas data
      Python
      •
      MIT License
      •2•8•0•1•Updated Mar 26, 2024Mar 26, 2024

    • slideseq-tools

      Public
      Tools for analyzing Slide-seq data
      python
      Python
      •9•31•5•1•Updated Oct 30, 2023Oct 30, 2023

    • vitessce

      Public
      Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
      JavaScript
      •
      MIT License
      •59•0•0•0•Updated Dec 16, 2021Dec 16, 2021

    • cerebellum-atlas-analysis

      Public
      Code and scripts used in analysis of snRNAseq cerebellar cortex atlas
      HTML
      •4•12•1•0•Updated Oct 11, 2021Oct 11, 2021

    • colormap

      Public
      output rgb or hex colormaps
      JavaScript
      •
      MIT License
      •35•0•0•0•Updated Aug 10, 2021Aug 10, 2021

    • pyro-util

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated May 31, 2021May 31, 2021

    • PuckCaller

      Public
      Matlab package for image processing and base calling
      MATLAB
      •3•2•0•0•Updated Oct 7, 2020Oct 7, 2020

    • lab-sc-gcp

      Public
      Python package enabling easy set up of GCP projects for lab-wide interactive single cell analysis.
      Python
      •0•1•0•0•Updated Jul 8, 2020Jul 8, 2020

    • glsl-colormap

      Public
      colormaps for glsl shaders
      JavaScript
      •
      BSD 2-Clause "Simplified" License
      •5•0•0•0•Updated Oct 21, 2016Oct 21, 2016