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    129 repositories

    • sporeAI

      Public
      predicting sporulation
      Jupyter Notebook
      •0•0•0•0•Updated Oct 15, 2024Oct 15, 2024

    • symcel

      Public
      Bacillus microcalorimetry and growth
      GNU Affero General Public License v3.0
      •2•0•0•0•Updated Oct 14, 2024Oct 14, 2024

    • lennonlab.github.io

      Public
      lennon lab website
      HTML
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Oct 1, 2024Oct 1, 2024

    • astrodorm

      Public
      GNU Affero General Public License v3.0
      •2•0•0•0•Updated Sep 13, 2024Sep 13, 2024

    • residence-time-test

      Public
      R
      •
      GNU General Public License v3.0
      •1•0•0•0•Updated Sep 12, 2024Sep 12, 2024

    • SporeCosts

      Public
      Final repository for the spore cost project.
      R
      •
      MIT License
      •2•0•0•0•Updated Aug 29, 2024Aug 29, 2024

    • Rhizo_phage

      Public
      Rhizobia-phage interaction project
      Shell
      •1•0•0•0•Updated Aug 25, 2024Aug 25, 2024

    • division.labor

      Public
      GNU General Public License v3.0
      •2•0•0•1•Updated Aug 19, 2024Aug 19, 2024

    • Rpf

      Public
      Standard ML
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 9, 2024Aug 9, 2024

    • spore-life

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Jul 2, 2024Jul 2, 2024

    • rhizo.rb.tnseq

      Public
      HTML
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated May 16, 2024May 16, 2024

    • Bifidobacterium

      Public
      Adaptive evolution of probiotics
      HTML
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Mar 3, 2024Mar 3, 2024

    • sporeCostsVer2

      Public
      Calculation of energetic costs of spore formation based on protein abundance and gene expression data.
      R
      •1•0•0•0•Updated Dec 13, 2023Dec 13, 2023

    • SporeMut

      Public
      mutation accumulation in dormancy
      R
      •2•0•0•0•Updated Dec 13, 2023Dec 13, 2023

    • MetabolicDistribution

      Public
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 27, 2023Oct 27, 2023

    • globalmacroevo

      Public
      R
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 3, 2023Aug 3, 2023

    • XevoLong

      Public
      Experimental evolution of longevity
      HTML
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Aug 2, 2023Aug 2, 2023

    • MinimalCell

      Public
      HTML
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jul 27, 2023Jul 27, 2023

    • coevo-seedbank-seq

      Public
      sequencing data analysis
      GDScript
      •
      GNU General Public License v3.0
      •4•2•0•0•Updated Jun 26, 2023Jun 26, 2023

    • coevo-seedbank-ancestors

      Public
      Comparison of WT and mutant (spoIIE-KO) ancestral strains
      HTML
      •
      GNU General Public License v3.0
      •1•3•0•0•Updated May 11, 2023May 11, 2023

    • coevolution-ts

      Public
      Time series analyses of population densities from experimental coevolution with a seed bank.
      HTML
      •
      GNU General Public License v3.0
      •2•1•0•0•Updated May 10, 2023May 10, 2023

    • PhosTrait

      Public
      Generalist and specialist P strategies
      HTML
      •4•0•0•0•Updated Mar 24, 2023Mar 24, 2023

    • Phage_spore_adsorption

      Public
      analysis of phage adsorption assay with spores and vegatative cells
      R
      •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • spore_amg

      Public
      Sporulation gene in viromes
      HTML
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Jan 31, 2023Jan 31, 2023

    • RhizoTradeoffs

      Public
      Data analyses associated with determining the trade-offs among rhizobia symbionts that vary in symbiotic quality
      1•0•0•0•Updated Jan 31, 2023Jan 31, 2023

    • qbiodiversity

      Public
      Website for Quantitative Biodiversity course.
      HTML
      •1•0•0•0•Updated Dec 13, 2022Dec 13, 2022

    • Lab-Website

      Public
      HTML
      •2•1•0•0•Updated Nov 26, 2022Nov 26, 2022

    • dormant-life

      Public
      a project about if dormancy makes game of life work bettter
      Python
      •
      MIT License
      •2•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • carust

      Public
      A library for simulating 2D cellular automata in Rust
      Rust
      •
      GNU General Public License v3.0
      •2•0•0•0•Updated Oct 25, 2022Oct 25, 2022

    • Gut

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Aug 24, 2022Aug 24, 2022