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@ISUgenomics Genome Informatics Facility

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    58 repositories

    • scinet-workbooks-devel

      Public
      Jupyter Notebook
      •
      Other
      •6•0•0•0•Updated Jan 5, 2026Jan 5, 2026

    • bioinformatics-workbook

      Public
      Bioinformatics Workbook repository
      bioinformatics
      HTML
      •
      MIT License
      •94•203•5•5•Updated Dec 17, 2025Dec 17, 2025

    • isu-commandline-intro-2025

      Public
      An introduction to the command line.
      Shell
      •0•0•0•0•Updated Dec 3, 2025Dec 3, 2025

    • ChickenSFB-GenomeAssembly

      Public
      Shell
      •0•0•0•0•Updated Nov 25, 2025Nov 25, 2025

    • F2025-BCB-5670-01

      Public
      Week of 10/27. LLM and RNA-Seq learning to prompt.
      0•0•0•0•Updated Oct 30, 2025Oct 30, 2025

    • isu-nextflow-workshop

      Public
      Developing pipelines with Nextflow
      Nextflow
      •0•0•0•0•Updated Oct 21, 2025Oct 21, 2025

    • datascience-workbook

      Public
      Introduction to large scale computing and data wrangling with hands-on tutorials
      pythonlinuxclirjuliaproject-managementcloud-computingresearch-projectdata-wranglingdevelopment-environment
      HTML
      •
      MIT License
      •7•16•0•0•Updated Oct 14, 2025Oct 14, 2025

    • isu-bash-pipeline-2025

      Public
      Introduction to pipeline development in bash
      Shell
      •1•0•0•0•Updated Oct 14, 2025Oct 14, 2025

    • common_scripts

      Public
      my bin directory
      Perl
      •45•45•2•0•Updated Sep 4, 2025Sep 4, 2025

    • Repo_skeleton

      Public
      Default files to copy over to a new Repo
      8•9•0•0•Updated Sep 2, 2025Sep 2, 2025

    • repoReleases

      Public
      Grab all Bioinformatic software release notes.
      JavaScript
      •0•0•0•0•Updated Aug 26, 2025Aug 26, 2025

    • 2025-nextflow-workshop

      Public
      Nextflow
      •0•1•0•0•Updated Jun 2, 2025Jun 2, 2025

    • genome_assembly_workshop

      Public
      This repository details the various datasets and techniques attempted by the Genome informatics facility toward the goal of conducting USDA genome assembly workshop in June 2024.
      HTML
      •0•0•0•0•Updated May 7, 2025May 7, 2025

    • interactiveGraphing

      Public
      Using python, Plotly and dash to visualize informatics data.
      Python
      •0•0•0•0•Updated Nov 19, 2024Nov 19, 2024

    • 2024_Toth_Bimpatiens

      Public
      R
      •0•0•0•0•Updated Oct 17, 2024Oct 17, 2024

    • geospatialworkbook

      Public
      Tutorials for the informatics on geographical information
      Jupyter Notebook
      •8•7•0•2•Updated Aug 14, 2024Aug 14, 2024

    • 2024_Baum_SCN_Protease_Collaboration

      Public
      0•0•0•0•Updated Aug 8, 2024Aug 8, 2024

    • B_dahlbomii_Genome_And_Annotation

      Public
      0•2•0•0•Updated Apr 4, 2024Apr 4, 2024

    • data_graphing

      Public
      ready-made python-Plotly applications for data visualization
      HTML
      •1•0•0•0•Updated Dec 21, 2023Dec 21, 2023

    • geo_utils

      Public
      The collection of small Python-based utilities for geospatial analysis
      Python
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Sep 12, 2023Sep 12, 2023

    • data_wrangling

      Public
      mini python applications for common tasks in data processing
      Python
      •0•1•0•0•Updated May 3, 2023May 3, 2023

    • 2022_Bean_mergeData

      Public
      Add matching labels from the reference 2-column file of label pairs.
      Python
      •0•0•1•0•Updated Mar 22, 2023Mar 22, 2023

    • 101workbook

      Public
      This is the index page for anyone that tries the main domain name and can't remember the subdomain names
      HTML
      •0•1•0•0•Updated Jan 12, 2023Jan 12, 2023

    • ideogram_db

      Public
      HTML
      •0•0•0•0•Updated Oct 26, 2022Oct 26, 2022

    • AI-workbook

      Public
      AI workbook to put tutorials
      HTML
      •
      MIT License
      •1•0•0•0•Updated Sep 16, 2022Sep 16, 2022

    • SequelQC

      Public
      PacBio quality check program specifically for Sequel platform
      R
      •
      GNU General Public License v3.0
      •2•8•2•0•Updated Sep 2, 2022Sep 2, 2022

    • scinet-site

      Public
      A prototype of the USDA-ARS Website
      HTML
      •
      Other
      •141•0•0•0•Updated Jul 18, 2022Jul 18, 2022

    • elk_genomics

      Public
      Elk Genome Assembly project
      Roff
      •0•3•0•0•Updated Oct 26, 2021Oct 26, 2021

    • Zengyi-2021-ScheffersomycesStipitis

      Public
      0•0•0•0•Updated Oct 1, 2021Oct 1, 2021

    • common_analyses

      Public
      Repository of common bioinformatics scripts
      Shell
      •23•39•1•0•Updated Sep 21, 2021Sep 21, 2021