Skip to content

@HassounLab Hassoun Lab: Computational Systems + Synthetic Biology

Change the repository type filter

All

    Repositories list

    15 repositories

    • JESTR1

      Public
      Joint Embedding Space Technique for Ranking Candidate Molecules for the Annotation of Untargeted Metabolomics Data
      Python
      •
      MIT License
      •0•2•0•0•Updated Nov 21, 2024Nov 21, 2024

    • PubChem-LLM-Retrieval

      Public
      This Github repository holds the supporting documents for the paper "Evaluation of search-enabled Pre-trained Large Language Models on retrieval tasks for the PubChem Database"
      0•0•0•0•Updated Oct 21, 2024Oct 21, 2024

    • BAM

      Public
      Biotransformation-based annotation method
      Python
      •0•4•0•0•Updated Sep 24, 2024Sep 24, 2024

    • ESP

      Public
      ESP model
      machine-learningmass-spectrometry
      Python
      •
      MIT License
      •0•1•1•0•Updated May 3, 2024May 3, 2024

    • Boost-RS

      Public
      Boosted Embeddings for Recommender Systems and its Application to Enzyme-Substrate Interaction Prediction
      Python
      •
      MIT License
      •2•5•0•0•Updated Mar 6, 2024Mar 6, 2024

    • PROXIMAL2

      Public
      PROXIMAL2 algorithm
      Python
      •2•5•0•0•Updated Oct 9, 2023Oct 9, 2023

    • EPP

      Public
      Code for the paper "Enzyme Promiscuity Prediction using hierarchy-informed multi-label classification"
      Python
      •3•13•0•0•Updated Aug 7, 2023Aug 7, 2023

    • ASAP-SML

      Public
      ASAP-SML: An Antibody Sequence Analysis Pipeline Using Statistical Testing and Machine Learning
      Jupyter Notebook
      •
      MIT License
      •3•11•0•2•Updated Jul 6, 2023Jul 6, 2023

    • GNN-SOM

      Public
      Site-of-Metabolsim prediction using Graph Neural Networks.
      Jupyter Notebook
      •
      MIT License
      •2•15•0•0•Updated Mar 30, 2023Mar 30, 2023

    • PER_BRENDA

      Public
      Python
      •
      MIT License
      •1•0•0•0•Updated Feb 8, 2023Feb 8, 2023

    • CSI

      Public
      Python
      •
      MIT License
      •1•1•1•0•Updated Dec 12, 2022Dec 12, 2022

    • MDFlow

      Public
      Python
      •0•0•0•0•Updated Dec 30, 2020Dec 30, 2020

    • ELP

      Public
      Enzymatic Link Prediction
      machine-learningbioinformaticsmetabolic-networkmetabolic-reconstructionmetabolic-engineeringenzyme-function
      Python
      •0•5•0•0•Updated Aug 19, 2020Aug 19, 2020

    • PUMA

      Public
      Pathway Activity Analysis and Metabolite Annotation for Untargeted Metabolomics using Probabilistic Modeling
      Python
      •0•5•0•0•Updated Nov 23, 2019Nov 23, 2019

    • gEFM

      Public
      C++
      •
      Other
      •0•0•0•0•Updated Aug 25, 2018Aug 25, 2018