Repositories list

• omero-ontop-mappings

  Public
  ONTOP module for querying OMERO with SPARQL

  Shell

  •

  BSD 3-Clause "New" or "Revised" License

  •4•2•7•0•Updated Jan 12, 2026Jan 12, 2026

• omero-autotag

  Public
  Extensions to OMERO.web to enhance tagging

  omero-web

  JavaScript

  •

  GNU Affero General Public License v3.0

  •4•0•5•0•Updated Jan 9, 2026Jan 9, 2026

• ro-crate-explorer

  Public
  Vue

  •

  Apache License 2.0

  •2•0•0•0•Updated Jan 6, 2026Jan 6, 2026

• ome-zarr-acknowledgments

  Public
  People that have contributed to OME-Zarr at some point

  HTML

  •10•3•6•1•Updated Dec 22, 2025Dec 22, 2025

• bioimageaipub

  Public
  BioimageAIpub: a toolbox for AI-ready bioimaging data publishing

  Python

  •

  Apache License 2.0

  •2•2•1•0•Updated Dec 17, 2025Dec 17, 2025

• incubator

  Public
  A place for issues to grow

  0•2•36•0•Updated Dec 8, 2025Dec 8, 2025

• omero-tagsearch

  Public
  Extensions to OMERO.web to enhance image/dataset/project filtering from tags.

  omero-web

  HTML

  •

  GNU Affero General Public License v3.0

  •3•0•5•2•Updated Dec 4, 2025Dec 4, 2025

• omero_macro-extensions

  Public
  Java

  •

  GNU General Public License v2.0

  •5•0•0•0•Updated Dec 4, 2025Dec 4, 2025

• omero-rdf

  Public
  A plugin for exporting RDF from OMERO

  nfdi4bioimage

  Python

  •

  GNU General Public License v2.0

  •12•15•21•7•Updated Dec 3, 2025Dec 3, 2025

• .github

  Public
  0•1•0•0•Updated Nov 25, 2025Nov 25, 2025

• RDM4mic

  Public
  RDM4mic working group - research data management for microscopy data

  data-managementmicroscopy

  Creative Commons Attribution 4.0 International

  •1•9•1•0•Updated Nov 19, 2025Nov 19, 2025

• sparql-examples

  Public
  A set of SPARQL examples that are used in different GerBI resources

  HTML

  •

  Other

  •29•1•0•2•Updated Oct 28, 2025Oct 28, 2025

• ome-zarr-ideas

  Public
  Ideas for supporting OME / OME-Zarr in the context of GerBI

  ideasome-zarr

  0•0•46•0•Updated Sep 16, 2025Sep 16, 2025

• RDM4mic.github.io

  Public
  0•0•0•0•Updated Sep 15, 2025Sep 15, 2025

• idr_metadata_model

  Public
  Python

  •

  Apache License 2.0

  •1•2•0•0•Updated Jul 31, 2025Jul 31, 2025

• jupyterhub-deploy-docker

  Public
  Reference deployment of JupyterHub with docker

  Python

  •

  BSD 3-Clause "New" or "Revised" License

  •388•0•0•0•Updated Apr 1, 2025Apr 1, 2025

• fiji_omero_workflows

  Public
  ImageJ/Fiji macros using OMERO

  ImageJ Macro

  •0•2•0•0•Updated Mar 28, 2025Mar 28, 2025

• omero_fileserver-import

  Public
  Script to import images from fileserver mounted on an OMERO server

  omeroomero-webomero-import+ 1omero-scripts

  Jupyter Notebook

  •

  GNU General Public License v3.0

  •2•8•1•0•Updated Dec 18, 2024Dec 18, 2024

• omero-scripts

  Public
  Core OMERO Scripts

  Python

  •32•2•0•0•Updated Dec 17, 2024Dec 17, 2024

• omero-rdf-wikidata

  Public
  Wikidata extension for omero-rdf

  Python

  •

  GNU General Public License v2.0

  •0•1•0•0•Updated Dec 11, 2024Dec 11, 2024

• ome-owl

  Public
  Mirror of https://gitlab.com/openmicroscopy/incubator/ome-owl

  Java

  •0•1•1•0•Updated Dec 11, 2024Dec 11, 2024

• fit-for-omero_ansible-playbook

  Public
  Ansible playbook examples to install OMERO used during the Fit for OMERO workshop

  Jinja

  •

  MIT License

  •0•2•0•0•Updated Dec 6, 2024Dec 6, 2024

• ome-ld

  Public
  Linked Data support for the OME Model

  nfdi4bioimage

  Python

  •3•3•5•2•Updated May 25, 2024May 25, 2024

• guide-KVpairs-scripts

  Public
  An OMERO guide to explain how to use the Key-Value pair scripts

  HTML

  •

  BSD 2-Clause "Simplified" License

  •1•2•0•0•Updated Mar 20, 2024Mar 20, 2024

• omero-tim2023-playbook

  Public
  Ansible playbook for the TiM2023 OMERO server

  0•0•0•1•Updated Jul 20, 2023Jul 20, 2023

• nfdi4bioimage

  Public
  0•3•0•0•Updated Jun 29, 2023Jun 29, 2023

• webtagging

  Public archive
  Extensions to OMERO.web to enhance tagging and searching

  webappomero

  JavaScript

  •

  GNU Affero General Public License v3.0

  •5•4•0•0•Updated Jun 27, 2023Jun 27, 2023

• dtplatform

  Public
  Infrastructure for the Delta Tissue Data Resource Catalog Platform

  Jupyter Notebook

  •2•0•31•0•Updated Jan 5, 2023Jan 5, 2023

• dtfuseki

  Public
  Deployment of the Jena Fuseki server for Delta Tissue

  Shell

  •

  Apache License 2.0

  •95•0•0•0•Updated Jan 5, 2023Jan 5, 2023

• dtfuseki2

  Public
  Apache Jena Fuseki with SeCo extensions

  Shell

  •18•0•0•0•Updated Jan 5, 2023Jan 5, 2023