Repositories list

• dREG-nf

  Public
  Shell

  •

  MIT License

  •0•0•1•1•Updated Oct 29, 2024Oct 29, 2024

• active-enhancers

  Public
  Identifying active enhancers and well known transcritption factor binding sites from GRO-seq data.

  Nextflow

  •

  MIT License

  •1•1•0•0•Updated Sep 9, 2024Sep 9, 2024

• IFN_heterogeneity

  Public
  Code used in IFN heterogeneity paper

  R

  •

  MIT License

  •1•0•0•1•Updated Aug 19, 2024Aug 19, 2024

• primer3-nf

  Public
  A Nextflow workflow for primer3

  Nextflow

  •1•1•0•0•Updated Aug 7, 2024Aug 7, 2024

• .github

  Public
  0•0•0•0•Updated May 23, 2024May 23, 2024

• Global-transcriptional-activity

  Public archive
  R

  •0•0•0•0•Updated Apr 26, 2024Apr 26, 2024

• Applied-Genomics

  Public archive
  JavaScript

  •9•1•1•0•Updated Apr 8, 2024Apr 8, 2024

• dREG

  Public
  Detecting Regulatory Elements using GRO-seq and PRO-seq

  R

  •21•0•0•0•Updated Apr 3, 2024Apr 3, 2024

• TEMP2-nf

  Public
  Algorithm to detect germline and de novo transposon insertions

  Shell

  •

  GNU General Public License v3.0

  •6•0•0•0•Updated Nov 14, 2023Nov 14, 2023

• reveal

  Public
  This pipeline takes screenshots of genomic regions using IGV

  Nextflow

  •1•0•0•0•Updated May 10, 2023May 10, 2023

• notebook-template

  Public archive
  Shell

  •1•0•2•0•Updated Sep 14, 2021Sep 14, 2021

• functional-genomics-extension-pack

  Public
  VS Code extension pack for bioinformatics and computational biology

  0•1•0•0•Updated Feb 18, 2021Feb 18, 2021

• bigWig

  Public
  R interface to query UCSC bigWig files

  C

  •8•0•0•0•Updated Aug 23, 2020Aug 23, 2020

• cookiecutter-snakemake-workflow

  Public archive
  Python

  •

  MIT License

  •1•0•0•0•Updated May 20, 2020May 20, 2020