v0.2.0

Major refactor of the siqc package (PR #21).

Breaking Changes

• Requires Node.js ≥18.0.0
• Data format changed from JSON to compressed binary format
• CLI interface replaces manual build steps
• Development now uses npm instead of pnpm due to CLI installation issues

New Functionality

• CLI tool with siqc command for generating reports
• Progressive loading with Web Workers for instant UI rendering
• Optimized spatial heatmap component with per-sample binning

Major Changes

• Binary data format with 5-10x compression and typed arrays
• Vite plugin for payload injection during build
• Performance monitoring with real-time metrics

v0.1.0

Initial release of the Standalone Interactive Quality Control (siqc) package.

Features

• Standalone interactive QC reports for single-cell RNA-seq and spatial transcriptomics data
• Currently supports single-cell RNA-seq data (CellRanger Multi) and spatial transcriptomics (Xenium)
• Comprehensive visualization suite: histograms, scatter plots, heatmaps, and spatial plots using Plotly.js
• Filter-based cell quality assessment with real-time updates and pass/fail statistics
• Sample comparison and batch analysis capabilities
• Responsive design with SolidJS framework and Tailwind CSS styling
• Standalone HTML output with embedded data for easy sharing and deployment