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Pull requests: openpipelines-bio/openpipeline

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Pull requests list

added ribosomal gene detection to workflows
#968 opened Feb 12, 2025 by jakubmajercik Loading…
10 tasks
Add basic integration tests for process_samples
#967 opened Feb 11, 2025 by DriesSchaumont Loading…
4 of 10 tasks
pin torch version for scanvi
#966 opened Feb 10, 2025 by dorien-er Loading…
4 of 10 tasks
Update scArches: align query with reference model
#964 opened Jan 31, 2025 by dorien-er • Draft
10 tasks
adapt test resource script
#963 opened Jan 28, 2025 by rcannood • Draft
3 of 10 tasks
update annotation resources
#960 opened Jan 21, 2025 by dorien-er Loading…
10 tasks
Scvi knn annotation workflow
#954 opened Jan 14, 2025 by dorien-er • Draft
4 of 10 tasks
Remove field duplication components
#952 opened Jan 14, 2025 by dorien-er • Draft
3 of 10 tasks
scanvi annotation workflow
#898 opened Nov 15, 2024 by dorien-er • Draft
10 tasks
bbknn knn workflow
#891 opened Oct 18, 2024 by dorien-er • Draft
4 of 10 tasks
Cell type annotation: scanorama knn workflow
#884 opened Sep 23, 2024 by dorien-er • Draft
3 of 10 tasks
openproblems interoperability POC
#883 opened Sep 20, 2024 by rcannood • Draft
10 tasks
Add atac_marker_peaks component
#879 opened Sep 17, 2024 by VladimirShitov Loading…
3 of 10 tasks
2.1.0
@DriesSchaumont
3
Cell type annotation: Harmony/KNN workflow
#836 opened Jul 12, 2024 by dorien-er Loading…
5 of 10 tasks
2.1.0
@DriesSchaumont
12
Annotation workflow
#829 opened Jul 8, 2024 by dorien-er • Draft
10 tasks
integration QC workflow
#795 opened Apr 26, 2024 by dorien-er • Draft
10 tasks
@dorien-er
Add dsb component
#588 opened Oct 17, 2023 by wxicu • Draft
5 of 10 tasks
@rcannood
9
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