v4.0.0

What's Changed

• TASK-6835 - Cellbase dependency error in opencga build by @juanfeSanahuja in #2502
• TASK-6879 - Adapt GitHub Actions, CICD workflows and release scripts to new SDLC by @juanfeSanahuja in #2506
• TASK-6458 - Deployment: Xetabase kubernetes 1.29 compatibility by @juanrizetta in #2501
• TASK-6780 - Port Patch 3.2.1 -> 4.0.0 - Xetabase 2.2.1 -> 3.0.0 by @juanfeSanahuja in #2513
• TASK-7097 - Port Patch 3.3.0 -> 4.0.0 Xetabase 2.3.0 -> 3.0.0 by @juanfeSanahuja in #2519
• TASK-7046 - Add a new field "type" to Notes data model by @pfurio in #2525
• TASK-5662 - Improve .bai and .bw files tracking by @pfurio in #2534
• TASK-7155: Upgrade MongoDB to v7.0 by @pfurio in #2524
• TASK-6446 - Implement quotas management by @pfurio in #2537
• TASK-6765 - Improve VCF Export performance from secondary sample index by @j-coll in #2503
• TASK-6757 - Deployment: Add Jupyter Notebooks feature by @juanfeSanahuja in #2544
• TASK-5914 Update Swagger for OpenCGA by @juanfeSanahuja in #2545
• TASK-7134 - Re-implement Aggregations Stats for all Catalog Browsers by @jtarraga in #2529
• TASK-7214 - Port patch 3.4.0 -> 4.0.0 by @juanfeSanahuja in #2546
• TASK-7192 - Enable Federation Support in XetaBase by @pfurio in #2541
• TASK-6369 - Update R client log-in to include organization parameter by @mbleda in #2543
• TASK-7102 Support SSO with OpenCGA CLI and Python client by @dapregi in #2547
• TASK-7433 - Wrong quotas default value in configuration.yml by @pfurio in #2554
• TASK-6442 - Add Resources Management functionality by @pfurio in #2535
• TASK-7417 - New github workflow to manually delete dockers from DockerHub by @juanfeSanahuja in #2549
• TASK-7429 - Swagger WS body empty and can't be edited by @juanfeSanahuja in #2555
• TASK-5610 - Create the CVDB endpoint analysis/clinical/cvdb/variant/summary and overwrite analysis/clinical/variant by @jtarraga in #2480
• TASK-7439 - Variant Browsers shows a VariantQueryException when running aggregation stats by @jtarraga in #2556
• TASK-6445 - Implement OpenCGA Workflows with NextFlow by @pfurio in #2530
• TASK-7049 - Liftover analysis by @jtarraga in #2548
• TASK-7451 - OpenCGA workflow docker tag is hardcoded by @pfurio in #2558
• TASK-7443 - Some endpoints are not correctly displayed with Swagger by @juanfeSanahuja in #2557
• TASK-7484 - Alignment index error by @jtarraga in #2559
• TASK-7482 - opencga junit tests failed by @pfurio in #2567
• TASK-7486 - Reset password sent doesn't expire by @pfurio in #2562
• TASK-7560 - Problem creating study from federated installation by @pfurio in #2569
• TASK-7481 - Sample Index Configuration completely empty on new studies by @j-coll in #2560

New Contributors

• @mbleda made their first contribution in #2543

Full Changelog: v3.4.0...v4.0.0