v4.1.0

What's Changed

• TASK-4682 - Error in VariantExport VCF : Duplicate allele (pre-step to exomiser) by @j-coll in #282
• TASK-7318 - Error using VariantNormalizeExtension VAF by @j-coll in #285
• TASK-7589 - Port Patch 2.12.4 -> 3.2.3 Xetabase 1.10.9 -> 2.2.3 by @juanfeSanahuja in #289
• TASK-7531 - Port Patch 2.12.4 -> 3.5.0 XB 1.10.9 -> 2.5.0 by @juanfeSanahuja in #290
• TASK-5925 - Execute aggregation-family without ArchiveTable for non-gVCF files by @j-coll in #288
• TASK-7693-rel - Upgrade Ubuntu image on GitHub Actions by @juanfeSanahuja in #291
• Portpatch 3.2.3 -> 4.1.0-SNAPSHOT by @juanfeSanahuja in #294
• Portpatch 3.2.3 -> 3.6.0-SNAPSHOT by @juanfeSanahuja in #296
• Portpatch 3.5.0 -> 4.1.0-SNAPSHOT by @juanfeSanahuja in #295
• Portpatch 3.6.0 -> 4.1.0-SNAPSHOT by @juanfeSanahuja in #299
• Adapt Biodata models to new COSMIC file version by @jtarraga in #298
• Task 7892 - SIGSEGV error when running CosmicVariantAnnotationExtension by @jtarraga in #300

Full Changelog: v4.0.0...v4.1.0

v3.6.0

What's Changed

• TASK-7589 - Port Patch 2.12.4 -> 3.2.3 Xetabase 1.10.9 -> 2.2.3 by @juanfeSanahuja in #289
• Portpatch 3.2.3 -> 3.6.0-SNAPSHOT by @juanfeSanahuja in #296

Full Changelog: v3.5.0...v3.6.0

v3.5.0

What's Changed

• TASK-5425 - PortPatch 1.10.1 -> 2.0.0 by @juanfeSanahuja in #253
• TASK-4437 - Update general dependencies from dependabot (security alerts) by @juanfeSanahuja in #254
• TASK-5444 - Fix OpenCB repository versions to conform to XetaBase 2.0.0 version by @juanfeSanahuja in #256
• TASK-4158 by @jtarraga in #255
• TASK-5605 - Modification of CI/CD to run opencga and opencga-enterprise unit tests by @juanfeSanahuja in #260
• TASK-4970 - New CI/CD should be triggered when a PR is approved for OpenCGA repository by @juanfeSanahuja in #264
• TASK-6266 - OpenCGA-Storage test failed on develop branch by @j-coll in #268
• TASK-6647 - Fix Port Patch 1.10.4 -> 2.2.1 release by @juanfeSanahuja in #274
• TASK-6399 - CI/CD: Include save reports option for tasks workflows by @juanfeSanahuja in #266
• TASK-5964 - Clinical Improvements by @pfurio in #265
• TASK-6708 - Port Patch 2.12.7 -> 3.2.1 (Xetabase 1.10.7 -> 2.2.1) by @juanfeSanahuja in #275
• TASK-6807 - Pull request approve workflow Fail by @juanfeSanahuja in #276
• TASK-6879 - Adapt GitHub Actions, CICD workflows and release scripts to new SDLC by @juanfeSanahuja in #277
• TASK-5318 - Implement custom annotator to allow clients private files by @jtarraga in #262
• TASK-7301 - PR approve workflow also runs on PR comment by @juanfeSanahuja in #284
• TASK-7318 - Error using VariantNormalizeExtension VAF by @j-coll in #285
• TASK-7531 - Port Patch 2.12.4 -> 3.5.0 XB 1.10.9 -> 2.5.0 by @juanfeSanahuja in #290

Full Changelog: v2.12.4...v3.5.0

v3.2.3

What's Changed

• TASK-4682 - Error in VariantExport VCF : Duplicate allele (pre-step to exomiser) by @j-coll in #282
• TASK-7589 - Port Patch 2.12.4 -> 3.2.3 Xetabase 1.10.9 -> 2.2.3 by @juanfeSanahuja in #289

Full Changelog: v3.2.2...v3.2.3

v4.0.0

What's Changed

• TASK-6647 - Fix Port Patch 1.10.4 -> 2.2.1 develop by @juanfeSanahuja in #273
• TASK-6879 - Adapt GitHub Actions, CICD workflows and release scripts to new SDLC by @juanfeSanahuja in #278
• TASK-6780 - Port Patch 3.2.1 -> 4.0.0 - Xetabase 2.2.1 -> 3.0.0 by @juanfeSanahuja in #279
• TASK-7097 - Port Patch 3.3.0 -> 4.0.0 Xetabase 2.3.0 -> 3.0.0 by @juanfeSanahuja in #281
• TASK-7170 - Fix addIndividual function in VariantMetadataManager by @jtarraga in #283
• Re-implement Aggregations Stats for all Catalog Browsers by @jtarraga in #287
• Port patch 3.4.0 -> 4.0.0 by @juanfeSanahuja in #286
• TASK-5610 - Create the CVDB endpoint analysis/clinical/cvdb/variant/summary and overwrite analysis/clinical/variant by @jtarraga in #267

Full Changelog: v3.4.0...v4.0.0

v2.12.4

What's Changed

• TASK-4682 - Error in VariantExport VCF : Duplicate allele (pre-step to exomiser) by @j-coll in #282

Full Changelog: v2.12.3...v2.12.4

v3.4.0

What's Changed

• TASK-7301 - PR approve workflow also runs on PR comment by @juanfeSanahuja in #284

Full Changelog: v3.3.0...v3.4.0

v3.3.0

What's Changed

• TASK-6879 - Adapt GitHub Actions, CICD workflows and release scripts to new SDLC by @juanfeSanahuja in #277
• TASK-5318 - Implement custom annotator to allow clients private files by @jtarraga in #262

Full Changelog: v3.2.2...v3.3.0

v3.2.2

Full Changelog: v3.2.1...v3.2.2

v3.2.1

What's Changed

• Increase MAX_REGION_COVERAGE by @jtarraga in #258
• TASK-5789 - New data model Snp by @jtarraga in #259
• TASK-6122 - Wrong normalization of variants with ins seq by @j-coll in #261
• TASK-6558 - Issue indexing variants with length 0 (i.e. start > end) and CIEND #269 by @j-coll in #270
• TASK-6647 - Fix Port Patch 1.10.4 -> 2.2.1 release by @juanfeSanahuja in #274
• TASK-6399 - CI/CD: Include save reports option for tasks workflows by @juanfeSanahuja in #266
• TASK-5964 - Clinical Improvements by @pfurio in #265
• TASK-6708 - Port Patch 2.12.7 -> 3.2.1 (Xetabase 1.10.7 -> 2.2.1) by @juanfeSanahuja in #275
• TASK-6807 - Pull request approve workflow Fail by @juanfeSanahuja in #276

Full Changelog: v3.2.0...v3.2.1