open2c · Phlya · Nov 7, 2023 · Nov 8, 2023 · Nov 8, 2023 · Nov 8, 2023
diff --git a/command_line_interface.ipynb b/command_line_interface.ipynb
diff --git a/compartments_and_saddles.ipynb b/compartments_and_saddles.ipynb
diff --git a/contacts_vs_distance.ipynb b/contacts_vs_distance.ipynb
diff --git a/cooler_manipulation.ipynb b/cooler_manipulation.ipynb
diff --git a/dots.ipynb b/dots.ipynb
diff --git a/environment.yml b/environment.yml
@@ -20,5 +20,6 @@ dependencies:
         - seaborn
         - pybbi
         - cooler
-        - cooltools==0.5.4
+        - bioframe==0.5.1
+        - cooltools==0.6.1
 
diff --git a/insulation_and_boundaries.ipynb b/insulation_and_boundaries.ipynb
diff --git a/pileup_CTCF.ipynb b/pileup_CTCF.ipynb
diff --git a/viz.ipynb b/viz.ipynb