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Merge pull request #1194 from ontodev/repair-merge-annotations
Make repair command more flexible
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<?xml version="1.0"?> | ||
<rdf:RDF xmlns="http://purl.obolibrary.org/obo/uberon.owl#" | ||
xml:base="http://purl.obolibrary.org/obo/uberon.owl" | ||
xmlns:obo="http://purl.obolibrary.org/obo/" | ||
xmlns:owl="http://www.w3.org/2002/07/owl#" | ||
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" | ||
xmlns:xml="http://www.w3.org/XML/1998/namespace" | ||
xmlns:xsd="http://www.w3.org/2001/XMLSchema#" | ||
xmlns:foaf="http://xmlns.com/foaf/0.1/" | ||
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" | ||
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#"> | ||
<owl:Ontology rdf:about="http://purl.obolibrary.org/obo/uberon.owl"/> | ||
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<!-- | ||
/////////////////////////////////////////////////////////////////////////////////////// | ||
// | ||
// Annotation properties | ||
// | ||
/////////////////////////////////////////////////////////////////////////////////////// | ||
--> | ||
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<!-- http://purl.obolibrary.org/obo/IAO_0000115 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000115"/> | ||
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<!-- http://purl.obolibrary.org/obo/IAO_0000116 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000116"/> | ||
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<!-- http://purl.obolibrary.org/obo/IAO_0000232 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/IAO_0000232"/> | ||
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<!-- http://purl.obolibrary.org/obo/RO_0002174 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002174"/> | ||
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<!-- http://purl.obolibrary.org/obo/RO_0002175 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/RO_0002175"/> | ||
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<!-- http://purl.obolibrary.org/obo/UBPROP_0000001 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000001"/> | ||
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<!-- http://purl.obolibrary.org/obo/UBPROP_0000003 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000003"/> | ||
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<!-- http://purl.obolibrary.org/obo/UBPROP_0000007 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000007"/> | ||
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<!-- http://purl.obolibrary.org/obo/UBPROP_0000008 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000008"/> | ||
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<!-- http://purl.obolibrary.org/obo/UBPROP_0000009 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000009"/> | ||
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<!-- http://purl.obolibrary.org/obo/UBPROP_0000012 --> | ||
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<owl:AnnotationProperty rdf:about="http://purl.obolibrary.org/obo/UBPROP_0000012"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#date_retrieved --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#date_retrieved"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#external_class --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#external_class"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#external_ontology --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#external_ontology"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#hasAlternativeId --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasAlternativeId"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasBroadSynonym"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#hasDbXref --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasDbXref"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#hasExactSynonym --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasExactSynonym"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasNarrowSynonym"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#hasOBONamespace --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasOBONamespace"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#hasSynonymType --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#hasSynonymType"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#id --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#id"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#inSubset --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#inSubset"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#notes --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#notes"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#ontology --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#ontology"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#shorthand --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#shorthand"/> | ||
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<!-- http://www.geneontology.org/formats/oboInOwl#source --> | ||
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<owl:AnnotationProperty rdf:about="http://www.geneontology.org/formats/oboInOwl#source"/> | ||
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<!-- http://xmlns.com/foaf/0.1/depicted_by --> | ||
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<owl:AnnotationProperty rdf:about="http://xmlns.com/foaf/0.1/depicted_by"/> | ||
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<!-- | ||
/////////////////////////////////////////////////////////////////////////////////////// | ||
// | ||
// Object Properties | ||
// | ||
/////////////////////////////////////////////////////////////////////////////////////// | ||
--> | ||
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<!-- http://purl.obolibrary.org/obo/BFO_0000050 --> | ||
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<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000050"> | ||
<owl:inverseOf rdf:resource="http://purl.obolibrary.org/obo/BFO_0000051"/> | ||
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/> | ||
<oboInOwl:hasDbXref>BFO:0000050</oboInOwl:hasDbXref> | ||
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace> | ||
<oboInOwl:id>part_of</oboInOwl:id> | ||
<oboInOwl:shorthand>part_of</oboInOwl:shorthand> | ||
<rdfs:label>part_of</rdfs:label> | ||
</owl:ObjectProperty> | ||
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<!-- http://purl.obolibrary.org/obo/BFO_0000051 --> | ||
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<owl:ObjectProperty rdf:about="http://purl.obolibrary.org/obo/BFO_0000051"> | ||
<rdf:type rdf:resource="http://www.w3.org/2002/07/owl#TransitiveProperty"/> | ||
<oboInOwl:hasDbXref>BFO:0000051</oboInOwl:hasDbXref> | ||
<oboInOwl:hasOBONamespace>uberon</oboInOwl:hasOBONamespace> | ||
<oboInOwl:id>has_part</oboInOwl:id> | ||
<oboInOwl:shorthand>has_part</oboInOwl:shorthand> | ||
<rdfs:label>has_part</rdfs:label> | ||
</owl:ObjectProperty> | ||
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<!-- | ||
/////////////////////////////////////////////////////////////////////////////////////// | ||
// | ||
// Classes | ||
// | ||
/////////////////////////////////////////////////////////////////////////////////////// | ||
--> | ||
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<!-- http://purl.obolibrary.org/obo/UBERON_0000062 --> | ||
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000062"> | ||
<rdfs:subClassOf> | ||
<owl:Restriction> | ||
<owl:onProperty rdf:resource="http://purl.obolibrary.org/obo/BFO_0000050"/> | ||
<owl:someValuesFrom rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000467"/> | ||
</owl:Restriction> | ||
</rdfs:subClassOf> | ||
<obo:IAO_0000115>Anatomical structure that performs a specific function or group of functions [WP].</obo:IAO_0000115> | ||
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/page1"/> | ||
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/page2"/> | ||
<oboInOwl:hasDbXref rdf:resource="http://linkedlifedata.com/resource/umls/id/C0178784"/> | ||
<oboInOwl:hasDbXref rdf:resource="http://ncicb.nci.nih.gov/xml/owl/EVS/Organ"/> | ||
<oboInOwl:hasDbXref>WBbt:0003760</oboInOwl:hasDbXref> | ||
<oboInOwl:hasRelatedSynonym>anatomical unit</oboInOwl:hasRelatedSynonym> | ||
<oboInOwl:hasRelatedSynonym>body organ</oboInOwl:hasRelatedSynonym> | ||
<oboInOwl:hasRelatedSynonym>element</oboInOwl:hasRelatedSynonym> | ||
<oboInOwl:id>UBERON:0000062</oboInOwl:id> | ||
<rdfs:label>organ</rdfs:label> | ||
</owl:Class> | ||
<owl:Axiom> | ||
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000062"/> | ||
<owl:annotatedProperty rdf:resource="http://purl.obolibrary.org/obo/IAO_0000115"/> | ||
<owl:annotatedTarget>Anatomical structure that performs a specific function or group of functions [WP].</owl:annotatedTarget> | ||
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/page1"/> | ||
<oboInOwl:hasDbXref rdf:resource="http://en.wikipedia.org/wiki/page2"/> | ||
</owl:Axiom> | ||
<owl:Axiom> | ||
<owl:annotatedSource rdf:resource="http://purl.obolibrary.org/obo/UBERON_0000062"/> | ||
<owl:annotatedProperty rdf:resource="http://www.geneontology.org/formats/oboInOwl#hasRelatedSynonym"/> | ||
<owl:annotatedTarget>body organ</owl:annotatedTarget> | ||
<oboInOwl:hasDbXref rdf:resource="UBERON:123"/> | ||
<oboInOwl:source rdf:resource="http://en.wikipedia.org/wiki/page1"/> | ||
<oboInOwl:source rdf:resource="http://en.wikipedia.org/wiki/page2"/> | ||
</owl:Axiom> | ||
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<!-- http://purl.obolibrary.org/obo/UBERON_0000467 --> | ||
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<owl:Class rdf:about="http://purl.obolibrary.org/obo/UBERON_0000467"/> | ||
</rdf:RDF> | ||
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<!-- Generated by the OWL API (version 4.5.26) https://github.com/owlcs/owlapi --> | ||
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