Move current Octue SDK code into twined subpackage

[cortadocodes]

Contents (#737)

IMPORTANT: There are 4 breaking changes.

Fixes

• Update command in dockerfiles to use new octue twined CLI

Refactoring

• 💥 BREAKING CHANGE: Move Twined-related octue code into twined subpackage
• 💥 BREAKING CHANGE: Rename OCTUE_SERVICES_TOPIC_NAME to TWINED_SERVICES_TOPIC_NAME
• 💥 BREAKING CHANGE: Move octue.runner to octue.twined.runner
• 💥 BREAKING CHANGE: Remove unused folders, isfolder, and isfile utils
• Merge TwinedEncoder with OctueJSONEncoder
• Rename scripts

Testing

• Restructure test directories
• Remove unused base test method

---

Upgrade instructions

💥 Move Twined-related `octue` code into `twined` subpackage

Import Twined-related code that was formerly in octue from octue.twined

💥 Rename `OCTUE_SERVICES_TOPIC_NAME` to `TWINED_SERVICES_TOPIC_NAME`

Use the TWINED_SERVICES_TOPIC_NAME envvar instead of OCTUE_SERVICES_TOPIC_NAME and ensure its value ends in octue.twined.services

💥 Move `octue.runner` to `octue.twined.runner`

Use the new import path: from octue.twined.runner import Runner (note that from octue.twined import Runner will not work)

💥 Remove unused `folders`, `isfolder`, and `isfile` utils

Stop using the get_file_name_from_strand, isfolder, and isfile functions

[codecov-commenter]

Codecov Report

❌ Patch coverage is 98.43750% with 3 lines in your changes missing coverage. Please review.
✅ Project coverage is 93.98%. Comparing base (19ed977) to head (e0f4a2b).
⚠️ Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
octue/twined/log_handlers.py	95.34%	2 Missing ⚠️
octue/twined/cloud/service_id.py	87.50%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##             main     #737      +/-   ##
==========================================
- Coverage   94.29%   93.98%   -0.31%     
==========================================
  Files          92       97       +5     
  Lines        3836     3858      +22     
==========================================
+ Hits         3617     3626       +9     
- Misses        219      232      +13     

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