tests: fixes & refactoring for nixpkgs-module #2835
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Rather than getting `runCommand` from the pkgs instance under test, get the function from a fixed/consistent pkgs instance.
Instead of importing the full set of top-level nixvim modules, only import the nixpkgs-module and its direct dependencies.
MattSturgeon
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In an effort to reduce the scope of #2738, I've extracted a handful of the refactoring, minor fixes, and general pep commits into this PR.