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1. rnaseq rnaseq Public

   Forked from nf-core/rnaseq

   RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

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2. modules modules Public

   Forked from nf-core/modules

   Repository to host tool-specific module files for the Nextflow DSL2 community!

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3. tools tools Public

   Forked from nf-core/tools

   Python package with helper tools for the nf-core community.

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4. atacseq atacseq Public

   Forked from nf-core/atacseq

   ATAC-seq peak-calling, QC and differential analysis pipeline

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5. sarek sarek Public

   Forked from nf-core/sarek

   Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

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6. viralrecon viralrecon Public

   Forked from nf-core/viralrecon

   Assembly and intrahost/low-frequency variant calling for viral samples

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