Update RGI to version 6.0.5

CHANGELOG.md

@@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 | Tool      | Previous Version | New Version |
 | --------- | ---------------- | ----------- |
 | antiSMASH | 7.1.0            | 8.0.1       |
+| RGI       | 6.0.3            | 6.0.5       |
 
 ### `Deprecated`
 

README.md

@@ -18,6 +18,8 @@
 
 [![Get help on Slack](http://img.shields.io/badge/slack-nf--core%20%23funcscan-4A154B?labelColor=000000&logo=slack)](https://nfcore.slack.com/channels/funcscan)[![Follow on Bluesky](https://img.shields.io/badge/bluesky-%40nf__core-1185fe?labelColor=000000&logo=bluesky)](https://bsky.app/profile/nf-co.re)[![Follow on Mastodon](https://img.shields.io/badge/mastodon-nf__core-6364ff?labelColor=FFFFFF&logo=mastodon)](https://mstdn.science/@nf_core)[![Watch on YouTube](http://img.shields.io/badge/youtube-nf--core-FF0000?labelColor=000000&logo=youtube)](https://www.youtube.com/c/nf-core)
 
+![HiRSE Code Promo Badge](https://img.shields.io/badge/Promo-8db427?style=plastic&label=HiRSE&labelColor=005aa0&link=https%3A%2F%2Fgo.fzj.de%2FCodePromo)
+
 ## Introduction
 
 **nf-core/funcscan** is a bioinformatics best-practice analysis pipeline for the screening of nucleotide sequences such as assembled contigs for functional genes. It currently features mining for antimicrobial peptides, antibiotic resistance genes and biosynthetic gene clusters.

conf/test_bakta.config

@@ -14,7 +14,7 @@ process {
     resourceLimits = [
         cpus: 4,
         memory: '15.GB',
-        time: '1.h'
+        time: '1.h',
     ]
 }
 
@@ -33,5 +33,6 @@ params {
     amp_hmmsearch_models             = params.pipelines_testdata_base_path + 'funcscan/hmms/mybacteriocin.hmm'
 
     run_arg_screening                = true
+    arg_skip_deeparg                 = true
     arg_fargene_hmmmodel             = 'class_a,class_b_1_2'
 }

modules.json

@@ -192,12 +192,12 @@
                     },
                     "rgi/cardannotation": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "531d8a465158c5842f416623017997462a240e16",
                         "installed_by": ["modules"]
                     },
                     "rgi/main": {
                         "branch": "master",
-                        "git_sha": "81880787133db07d9b4c1febd152c090eb8325dc",
+                        "git_sha": "531d8a465158c5842f416623017997462a240e16",
                         "installed_by": ["modules"]
                     },
                     "seqkit/seq": {