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@HaidYi HaidYi commented Apr 10, 2025


name: Patch the existing config
about: change config to catch more error exitcodes

On our HPC, the out of memory failures usually throw exit code 130, which isn’t caught by the current line:

errorStrategy  = { task.exitStatus in [143, 137, 134, 139, 140] ? 'retry' : 'finish' }

Replacing it with the current nf-core default, which was recently expanded to catch additional exit codes as:

errorStrategy = { task.exitStatus in ((130..145) + 104) ? 'retry' : 'finish' }

@HaidYi HaidYi requested a review from jfy133 April 10, 2025 15:07
@jfy133 jfy133 merged commit 76eb62b into nf-core:master Apr 11, 2025
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2 participants