Skip to content

Pull requests: nextstrain/ncov

New pull request New
22 Open 709 Closed
22 Open 709 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Reviews
Filter by reviews
No reviews Review required Approved review Changes requested
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Pull requests list

Add a map of Nextstrain clade to Pango lineage
#1159 opened Oct 23, 2024 by huddlej Loading…
4 tasks
3
Designate clade 24H (LF.7)
#1158 opened Oct 18, 2024 by corneliusroemer • Draft
@corneliusroemer
1
Demo prefilter rule for Nextstrain GISAID build
#1128 opened Jul 25, 2024 by huddlej Loading…
4 tasks
inline root sequence
#1111 opened May 30, 2024 by rneher Loading…
Document example accepted docker image formats for action
#1105 opened May 3, 2024 by victorlin Loading…
1
@victorlin
Include profile for open 21L builds
#1101 opened Mar 9, 2024 by trvrb Loading…
1 task done
1
Update Suffolk lat/long
#1100 opened Feb 27, 2024 by joverlee521 Loading…
Introduce minimum augur version check
#1070 opened May 16, 2023 by jameshadfield Loading…
3
Allow specification of container image in workflow rebuild-100k.yml
#1067 opened May 5, 2023 by corneliusroemer Loading…
2
Soft-mask (just for topology) 486P site 23018
#1060 opened Apr 11, 2023 by corneliusroemer Loading…
4 tasks
2
Allow a list of sequence exclusion files, instead of just one
#977 opened Jul 11, 2022 by sacundim Loading…
1
Memory resource definitions
#953 opened May 25, 2022 by tsibley Loading…
3 tasks
1
2
Fix annotate metadata with numeric strains
#952 opened May 25, 2022 by huddlej Loading…
2 tasks done
1
@huddlej
6
Remove whitespace indents from large Auspice JSONs
#944 opened May 9, 2022 by fanninpm Loading…
4 tasks
4
Fill in more lat/long data from the OpenStreetMap name-to-location API
#920 opened Apr 15, 2022 by jgadling Loading…
2
Add parameter to enable overriding tree args
#871 opened Feb 16, 2022 by huddlej Loading…
4 of 5 tasks
4
Remove redundant include strains bug Something isn't working
#843 opened Jan 25, 2022 by huddlej Loading…
2 tasks done
@huddlej
2
#657 Validate input files from config file
#821 opened Dec 15, 2021 by emontag47 Loading…
4 tasks
add submitters to footer filters;
#738 opened Sep 28, 2021 by eharkins Loading…
7
Implement subsampling via a script
#711 opened Aug 23, 2021 by jameshadfield Loading…
1 task
@huddlej @jameshadfield
Refactoring and Optimization
#678 opened Jul 2, 2021 by abnsy Loading…
Report Augur versions on error without --use-conda
#611 opened Apr 19, 2021 by huddlej Loading…
1 task
1
ProTip! Follow long discussions with comments:>50.