forked from bioconda/bioconda-recipes
-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Merge PR bioconda#34566, commits were: * Merge branch 'master' into strainscan * add strainscan recipes 5 * add strainscan recipes 4 * add strainscan recipes 3 * add strainscan recipes 2 * add strainscan recipes * Merge pull request #1 from bioconda/master add strainscan recipes * add strainscan recipes
- Loading branch information
Showing
1 changed file
with
51 additions
and
0 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,51 @@ | ||
{% set name = "strainscan" %} | ||
{% set version = "1.0.3" %} | ||
|
||
package: | ||
name: "{{ name|lower }}" | ||
version: "{{ version }}" | ||
|
||
source: | ||
url: https://pypi.io/packages/source/{{ name[0] }}/{{ name }}/{{ name }}-{{ version }}.tar.gz | ||
sha256: ec4f51274a0b8b47e0c61d4dd9aec8decf7beea0f3037fcf90eeaab049e00142 | ||
|
||
build: | ||
number: 0 | ||
entry_points: | ||
- strainscan = StrainScan.StrainScan:main | ||
- strainscan_build = StrainScan.StrainScan_build:main | ||
script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv " | ||
noarch: python | ||
|
||
requirements: | ||
host: | ||
- pip | ||
- python ==3.7.3 | ||
run: | ||
- python ==3.7.3 | ||
- sibeliaz ==1.2.2 | ||
- r-base ==4.0.2 | ||
- numpy ==1.17.3 | ||
- pandas ==1.0.1 | ||
- biopython ==1.74 | ||
- scipy ==1.3.1 | ||
- scikit-learn ==0.23.1 | ||
- bidict ==0.21.3 | ||
- treelib ==1.6.1 | ||
|
||
test: | ||
imports: | ||
- StrainScan | ||
commands: | ||
- strainscan --help | ||
- strainscan_build --help | ||
|
||
about: | ||
home: https://github.com/liaoherui/StrainScan | ||
license: MIT | ||
license_family: MIT | ||
summary: One efficient and accurate strain-level microbiome composition analysis tool based on reference genomes and k-mers. | ||
|
||
extra: | ||
recipe-maintainers: | ||
- liaoherui |