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Use IQ-Tree as the faster builder #47

Merged
merged 1 commit into from
Nov 20, 2024
Merged

Use IQ-Tree as the faster builder #47

merged 1 commit into from
Nov 20, 2024

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j23414
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@j23414 j23414 commented Nov 20, 2024

Description of proposed changes

Switching to IQ-Tree (view tree here) reduced runtime drastically during testing:

Before: https://github.com/nextstrain/WNV/actions/runs/11920429171 (4:57:42 ~ nearly 5 hours for the tree building benchmark)
After: https://github.com/nextstrain/WNV/actions/runs/11938827520 (0:04:13 ~ 4 minutes for the tree building benchmark)

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@j23414 j23414 linked an issue Nov 20, 2024 that may be closed by this pull request
@j23414 j23414 merged commit e7f5f7c into main Nov 20, 2024
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@j23414 j23414 deleted the use-iqtree branch November 20, 2024 19:23
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Replace RAxML tree building with IQ-Tree
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