Add mapping file host to host genus and host type

ingest/defaults/host_hostgenus_hosttype_map.tsv

@@ -0,0 +1,284 @@
+"Host"	"Host_Genus"	"Host_Type"
+"Homo sapiens"	"Homo"	"Human"
+"Culex pipiens"	"Culex"	"Mosquito"
+"Culex annulirostris"	"Culex"	"Mosquito"
+"Culex perexiguus"	"Culex"	"Mosquito"
+"Ochlerotatus communis"	"Ochlerotatus"	"Mosquito"
+"Anopheles maculipennis"	"Anopheles"	"Mosquito"
+"Culex quinquefasciatus"	"Culex"	"Mosquito"
+"Anopheles atroparvus"	"Anopheles"	"Mosquito"
+"Culex modestus"	"Culex"	"Mosquito"
+"Culex tarsalis"	"Culex"	"Mosquito"
+"Culex restuans"	"Culex"	"Mosquito"
+"Culiseta melanura"	"Culiseta"	"Mosquito"
+"Aedes cinereus"	"Aedes"	"Mosquito"
+"Culex"	"Culex"	"Mosquito"
+"Culex erraticus"	"Culex"	"Mosquito"
+"Culex salinarius"	"Culex"	"Mosquito"
+"Coquillettidia perturbans"	"Coquillettidia"	"Mosquito"
+"Psorophora ferox"	"Psorophora"	"Mosquito"
+"Culiseta morsitans"	"Culiseta"	"Mosquito"
+"Ochlerotatus canadensis"	"Ochlerotatus"	"Mosquito"
+"Culex tritaeniorhynchus"	"Culex"	"Mosquito"
+"Culex vishnui"	"Culex"	"Mosquito"
+"Culex neavei"	"Culex"	"Mosquito"
+"Culex poicilipes"	"Culex"	"Mosquito"
+"Culex bitaeniorhynchus"	"Culex"	"Mosquito"
+"Culex perfuscus"	"Culex"	"Mosquito"
+"Culex antennatus"	"Culex"	"Mosquito"
+"Aedes vexans"	"Aedes"	"Mosquito"
+"Culex pseudovishnui"	"Culex"	"Mosquito"
+"Culex gelidus"	"Culex"	"Mosquito"
+"Coquillettidia"	"Coquillettidia"	"Mosquito"
+"Aedes dalzieli"	"Aedes"	"Mosquito"
+"Mansonia uniformis"	"Mansonia"	"Mosquito"
+"Anopheles stephensi"	"Anopheles"	"Mosquito"
+"Culex sitiens"	"Culex"	"Mosquito"
+"Culiseta longiareolata"	"Culiseta"	"Mosquito"
+"Culex pipiens sensu lato"	"Culex"	"Mosquito"
+"Culex theileri"	"Culex"	"Mosquito"
+"Culex univittatus"	"Culex"	"Mosquito"
+"Culicidae"	"Culicidae"	"Mosquito"
+"Aedes albopictus"	"Aedes"	"Mosquito"
+"Anopheles hyrcanus"	"Anopheles"	"Mosquito"
+"Coquillettidia richiardii"	"Coquillettidia"	"Mosquito"
+"Anopheles plumbeus"	"Anopheles"	"Mosquito"
+"Culex pipiens complex"	"Culex"	"Mosquito"
+"Psorophora"	"Psorophora"	"Mosquito"
+"Culex stigmatosoma"	"Culex"	"Mosquito"
+"Culex erythrothorax"	"Culex"	"Mosquito"
+"Culex nigripalpus"	"Culex"	"Mosquito"
+"Culex pipiens pipiens"	"Culex"	"Mosquito"
+"Culex whitmorei"	"Culex"	"Mosquito"
+"Anopheles bancroftii"	"Anopheles"	"Mosquito"
+"Culex squamosus"	"Culex"	"Mosquito"
+"Anopheles farauti"	"Anopheles"	"Mosquito"
+"Culex pullus"	"Culex"	"Mosquito"
+"Culiseta"	"Culiseta"	"Mosquito"
+"Aedes sp."	"Aedes"	"Mosquito"
+"Anopheles sp."	"Anopheles"	"Mosquito"
+"Anopheles pauliani"	"Anopheles"	"Mosquito"
+"Anopheles coustani"	"Anopheles"	"Mosquito"
+"Aedeomyia madagascarica"	"Aedeomyia"	"Mosquito"
+"Ochlerotatus dorsalis"	"Ochlerotatus"	"Mosquito"
+"Ochlerotatus trivittatus"	"Ochlerotatus"	"Mosquito"
+"Culiseta inornata"	"Culiseta"	"Mosquito"
+"Ochlerotatus flavescens"	"Ochlerotatus"	"Mosquito"
+"Ochlerotatus spencerii"	"Ochlerotatus"	"Mosquito"
+"Uranotaenia unguiculata"	"Uranotaenia"	"Mosquito"
+"Ochlerotatus caspius"	"Ochlerotatus"	"Mosquito"
+"Ochlerotatus sollicitans"	"Ochlerotatus"	"Mosquito"
+"Ochlerotatus triseriatus"	"Ochlerotatus"	"Mosquito"
+"Ochlerotatus cantator"	"Ochlerotatus"	"Mosquito"
+"Ochlerotatus sticticus"	"Ochlerotatus"	"Mosquito"
+"Aedes rossicus"	"Aedes"	"Mosquito"
+"Uranotaenia"	"Uranotaenia"	"Mosquito"
+"Culex interrogator"	"Culex"	"Mosquito"
+"Anopheles messeae"	"Anopheles"	"Mosquito"
+"Pica pica"	"Pica"	"Bird"
+"Corvus cornix"	"Corvus"	"Bird"
+"Accipiter gentilis"	"Accipiter"	"Bird"
+"Cuculus canorus"	"Cuculus"	"Bird"
+"Falco peregrinus"	"Falco"	"Bird"
+"Corvus"	"Corvus"	"Bird"
+"Corvus brachyrhynchos"	"Corvus"	"Bird"
+"Aphelocoma californica"	"Aphelocoma"	"Bird"
+"Aphelocoma"	"Aphelocoma"	"Bird"
+"Accipiter cooperii"	"Accipiter"	"Bird"
+"Cyanocitta cristata"	"Cyanocitta"	"Bird"
+"Corvus corax"	"Corvus"	"Bird"
+"Corvus frugilegus"	"Corvus"	"Bird"
+"Corvus corone"	"Corvus"	"Bird"
+"Accipiter"	"Accipiter"	"Bird"
+"Falco tinnunculus"	"Falco"	"Bird"
+"Accipiter striatus"	"Accipiter"	"Bird"
+"Pica nuttalli"	"Pica"	"Bird"
+"Falco sparverius"	"Falco"	"Bird"
+"Pica hudsonia"	"Pica"	"Bird"
+"Accipiter nisus"	"Accipiter"	"Bird"
+"Falco"	"Falco"	"Bird"
+"Corvus ossifragus"	"Corvus"	"Bird"
+"Falco columbarius"	"Falco"	"Bird"
+"Falco punctatus"	"Falco"	"Bird"
+"Equus caballus"	"Equus"	"Horse"
+"Equus caballus x Equus asinus"	"Equus"	"Horse"
+"Hyalomma marginatum"	"Hyalomma"	"Tick"
+"Hyalomma scupense"	"Hyalomma"	"Tick"
+"Dermacentor marginatus"	"Dermacentor"	"Tick"
+"Rhipicephalus guilhoni"	"Rhipicephalus"	"Tick"
+"Hyalomma"	"Hyalomma"	"Tick"
+"Hyalomma marginatum marginatum"	"Hyalomma"	"Tick"
+"Rhipicephalus pulchellus"	"Rhipicephalus"	"Tick"
+"Hyalomma plumbeum plumbeum"	"Hyalomma"	"Tick"
+"Camelus bactrianus"	"Camelus"	"Other"
+"Rallus aquaticus"	"Rallus"	"Other"
+"Garrulus glandarius"	"Garrulus"	"Other"
+"Crocodylus niloticus"	"Crocodylus"	"Other"
+"Anatidae"	"Anatidae"	"Other"
+"Corvidae"	"Corvidae"	"Other"
+"Strigidae"	"Strigidae"	"Other"
+"Columbidae"	"Columbidae"	"Other"
+"Turdus philomelos"	"Turdus"	"Other"
+"Sturnus vulgaris"	"Sturnus"	"Other"
+"Turdus migratorius"	"Turdus"	"Other"
+"Haliaeetus leucocephalus"	"Haliaeetus"	"Other"
+"Mimus polyglottos"	"Mimus"	"Other"
+"Haemorhous mexicanus"	"Haemorhous"	"Other"
+"Phasianinae"	"Phasianinae"	"Other"
+"Phoenicopterus roseus"	"Phoenicopterus"	"Other"
+"Euphagus cyanocephalus"	"Euphagus"	"Other"
+"Passeridae"	"Passeridae"	"Other"
+"Passer domesticus"	"Passer"	"Other"
+"Galliformes"	"Galliformes"	"Other"
+"Tyto alba"	"Tyto"	"Other"
+"Buteo swainsoni"	"Buteo"	"Other"
+"Hirundo rustica"	"Hirundo"	"Other"
+"Accipitridae"	"Accipitridae"	"Other"
+"Sylvia atricapilla"	"Sylvia"	"Other"
+"Strix nebulosa"	"Strix"	"Other"
+"Athene noctua"	"Athene"	"Other"
+"Phalacrocorax carbo"	"Phalacrocorax"	"Other"
+"Aegypius monachus"	"Aegypius"	"Other"
+"Pandion haliaetus"	"Pandion"	"Other"
+"Asio otus"	"Asio"	"Other"
+"Gallus gallus"	"Gallus"	"Other"
+"Coloeus monedula"	"Coloeus"	"Other"
+"Podiceps cristatus"	"Podiceps"	"Other"
+"Trichoglossus moluccanus"	"Trichoglossus"	"Other"
+"Phoenicopterus chilensis"	"Phoenicopterus"	"Other"
+"Parus major"	"Parus"	"Other"
+"Phoenicopterus sp."	"Phoenicopterus"	"Other"
+"Pyrrhocorax graculus"	"Pyrrhocorax"	"Other"
+"Buteo"	"Buteo"	"Other"
+"Bubo scandiacus"	"Bubo"	"Other"
+"Serinus canaria"	"Serinus"	"Other"
+"Passer sp."	"Passer"	"Other"
+"Phoenicopterus ruber"	"Phoenicopterus"	"Other"
+"Cyanistes caeruleus"	"Cyanistes"	"Other"
+"Lathamus discolor"	"Lathamus"	"Other"
+"Mergus squamatus"	"Mergus"	"Other"
+"Bombycilla garrulus"	"Bombycilla"	"Other"
+"Phylloscopus collybita"	"Phylloscopus"	"Other"
+"Vicugna pacos"	"Vicugna"	"Other"
+"Mastomys erythroleucus"	"Mastomys"	"Other"
+"Canis lupus familiaris"	"Canis"	"Other"
+"Equus"	"Equus"	"Other"
+"Panthera leo"	"Panthera"	"Other"
+"Larus michahellis"	"Larus"	"Other"
+"Turdus merula"	"Turdus"	"Other"
+"Columba palumbus"	"Columba"	"Other"
+"Egretta garzetta"	"Egretta"	"Other"
+"Streptopelia decaocto"	"Streptopelia"	"Other"
+"Equus asinus"	"Equus"	"Other"
+"Apus apus"	"Apus"	"Other"
+"Hirundinidae"	"Hirundinidae"	"Other"
+"Curruca conspicillata"	"Curruca"	"Other"
+"Strix aluco"	"Strix"	"Other"
+"Aves"	"Aves"	"Other"
+"Anser"	"Anser"	"Other"
+"Larus crassirostris"	"Larus"	"Other"
+"Strix nebulosa lapponica"	"Strix"	"Other"
+"Chiroptera"	"Chiroptera"	"Other"
+"Buteo buteo"	"Buteo"	"Other"
+"Pluvialis apricaria"	"Pluvialis"	"Other"
+"Phoenicoparrus andinus"	"Phoenicoparrus"	"Other"
+"Trichoglossus haematodus"	"Trichoglossus"	"Other"
+"Spheniscus humboldti"	"Spheniscus"	"Other"
+"Equus ferus"	"Equus"	"Other"
+"Prunella modularis"	"Prunella"	"Other"
+"Acrocephalus dumetorum"	"Acrocephalus"	"Other"
+"Crocodylus porosus"	"Crocodylus"	"Other"
+"Giraffa giraffa"	"Giraffa"	"Other"
+"Ovis aries"	"Ovis"	"Other"
+"Syncerus caffer"	"Syncerus"	"Other"
+"Alopochen aegyptiaca"	"Alopochen"	"Other"
+"Cygnus olor"	"Cygnus"	"Other"
+"Spinus tristis"	"Spinus"	"Other"
+"Poecile atricapillus"	"Poecile"	"Other"
+"Buteo lineatus"	"Buteo"	"Other"
+"Baeolophus inornatus"	"Baeolophus"	"Other"
+"Pheucticus melanocephalus"	"Pheucticus"	"Other"
+"Calypte costae"	"Calypte"	"Other"
+"Zenaida macroura"	"Zenaida"	"Other"
+"Parulidae"	"Parulidae"	"Other"
+"Bubo virginianus"	"Bubo"	"Other"
+"Buteo jamaicensis"	"Buteo"	"Other"
+"Baeolophus bicolor"	"Baeolophus"	"Other"
+"Bos taurus"	"Bos"	"Other"
+"Clanga pomarina"	"Clanga"	"Other"
+"Quelea quelea"	"Quelea"	"Other"
+"Streptopelia capicola"	"Streptopelia"	"Other"
+"Oena capensis"	"Oena"	"Other"
+"Oriolus flavocinctus"	"Oriolus"	"Other"
+"Larus delawarensis"	"Larus"	"Other"
+"Colaptes auratus"	"Colaptes"	"Other"
+"Quiscalus quiscula"	"Quiscalus"	"Other"
+"Cardinalis cardinalis"	"Cardinalis"	"Other"
+"Sciurus carolinensis"	"Sciurus"	"Other"
+"Columba livia"	"Columba"	"Other"
+"Camelus dromedarius"	"Camelus"	"Other"
+"Nestor notabilis"	"Nestor"	"Other"
+"Pelecanus erythrorhynchos"	"Pelecanus"	"Other"
+"Phalacrocorax auritus"	"Phalacrocorax"	"Other"
+"Sternula antillarum"	"Sternula"	"Other"
+"Branta canadensis"	"Branta"	"Other"
+"Anas platyrhynchos"	"Anas"	"Other"
+"Pelecanus"	"Pelecanus"	"Other"
+"Loriini"	"Loriini"	"Other"
+"Sternula"	"Sternula"	"Other"
+"Quiscalus major"	"Quiscalus"	"Other"
+"Gymnogyps californianus"	"Gymnogyps"	"Other"
+"Asio flammeus"	"Asio"	"Other"
+"Coragyps atratus"	"Coragyps"	"Other"
+"Pelecanus occidentalis"	"Pelecanus"	"Other"
+"Cygnus buccinator"	"Cygnus"	"Other"
+"Charadrius melodus"	"Charadrius"	"Other"
+"Ictinia mississippiensis"	"Ictinia"	"Other"
+"Buteo regalis"	"Buteo"	"Other"
+"Calidris alba"	"Calidris"	"Other"
+"Sturnidae"	"Sturnidae"	"Other"
+"Mimus"	"Mimus"	"Other"
+"Larus smithsonianus"	"Larus"	"Other"
+"Actitis macularius"	"Actitis"	"Other"
+"Chroicocephalus ridibundus"	"Chroicocephalus"	"Other"
+"Hylocichla mustelina"	"Hylocichla"	"Other"
+"Toxostoma rufum"	"Toxostoma"	"Other"
+"Poecile carolinensis"	"Poecile"	"Other"
+"Meleagris gallopavo"	"Meleagris"	"Other"
+"Ixodoidea"	"Ixodoidea"	"Other"
+"Rodentia"	"Rodentia"	"Other"
+"Lanius ludovicianus"	"Lanius"	"Other"
+"Sciuridae"	"Sciuridae"	"Other"
+"Mus musculus"	"Mus"	"Other"
+"Aegithalos caudatus"	"Aegithalos"	"Other"
+"Phasianus colchicus"	"Phasianus"	"Other"
+"Haliaeetus albicilla"	"Haliaeetus"	"Other"
+"Crocodylus moreletii"	"Crocodylus"	"Other"
+"Alectorobius capensis"	"Alectorobius"	"Other"
+"Orcinus orca"	"Orcinus"	"Other"
+"Laridae"	"Laridae"	"Other"
+"Mesocricetus auratus"	"Mesocricetus"	"Other"
+"Sciurus niger"	"Sciurus"	"Other"
+"Aquila chrysaetos"	"Aquila"	"Other"
+"Rousettus leschenaultii"	"Rousettus"	"Other"
+"Pelophylax ridibundus"	"Pelophylax"	"Other"
+"Agelaius phoeniceus"	"Agelaius"	"Other"
+"Aquila fasciata"	"Aquila"	"Other"
+"Aquila adalberti"	"Aquila"	"Other"
+"Coracopsis vasa"	"Coracopsis"	"Other"
+"Cardinalis"	"Cardinalis"	"Other"
+"Fulica"	"Fulica"	"Other"
+"Quiscalus"	"Quiscalus"	"Other"
+"Phalacrocoracidae"	"Phalacrocoracidae"	"Other"
+"Butorides virescens"	"Butorides"	"Other"
+"Ardeidae"	"Ardeidae"	"Other"
+"Dumetella"	"Dumetella"	"Other"
+"Cricetinae"	"Cricetinae"	"Other"
+"Bubulcus ibis"	"Bubulcus"	"Other"
+"Spatula querquedula"	"Spatula"	"Other"
+"Bonasa umbellus"	"Bonasa"	"Other"
+"Ciconiidae"	"Ciconiidae"	"Other"
+"Ichthyaetus leucophthalmus"	"Ichthyaetus"	"Other"
+"Molothrus ater"	"Molothrus"	"Other"
+"Mephitis mephitis"	"Mephitis"	"Other"
+"Platycercus"	"Platycercus"	"Other"