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Add is_lab_host column to metadata
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Adding this column allows us to filter out lab hosts from the phylogenetic workflow.
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j23414 committed Oct 16, 2024
1 parent 66c283e commit 251df23
Showing 1 changed file with 3 additions and 0 deletions.
3 changes: 3 additions & 0 deletions ingest/defaults/config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -22,6 +22,7 @@ ncbi_datasets_fields:
- update-date
- length
- host-name
- is-lab-host
- isolate-lineage-source
- bioprojects
- biosample-acc
Expand Down Expand Up @@ -52,6 +53,7 @@ curate:
update-date: date_updated
length: length
host-name: host
is-lab-host: is_lab_host
isolate-lineage-source: sample_type
biosample-acc: biosample_accessions
sra-accs: sra_accessions
Expand Down Expand Up @@ -110,6 +112,7 @@ curate:
'location',
'state',
'host',
'is_lab_host',
#'date_submitted',
#'sra_accession',
#'abbr_authors',
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