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29 Open 115 Closed
29 Open 115 Closed
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Issues list

Can you parallelize treetime?
#288 opened Nov 28, 2024 by fjcorfel
ERROR: only integer scalar arrays can be converted to a scalar index
#286 opened Nov 21, 2024 by avantonder
2
Documentation on CLI function 'clock' is wrong. Date has to be date format not year decimal.
#275 opened Jul 31, 2024 by m-d-grunnill
3
MissingDataError: ERROR: Cannot read metadata:
#274 opened May 31, 2024 by aliciapm7
3
Question about branch length in mugration
#271 opened Mar 30, 2024 by Tonny-zhou
1
incorrectly mutation-annotated branch on phylogeny
#269 opened Mar 11, 2024 by akifoss
1
IndexError: too many indices for array: array is 1-dimensional, but 2 were indexed
#260 opened Nov 6, 2023 by ritawyt
2
ENH: Better error message when input alignment has sequences of unequal length enhancement
#258 opened Sep 6, 2023 by corneliusroemer
@corneliusroemer
1
skyline: TypeError: can't multiply sequence by non-int of type 'float'
#256 opened Aug 17, 2023 by judyssister
Not generating confidence intervals of divergence times, rate or root date
#254 opened Aug 4, 2023 by katie110621
1
More than one record found in handle
#247 opened Jul 2, 2023 by ashotmarg
4
Binary Sequence Alignement
#245 opened Jun 8, 2023 by adrienlemeur
3
ENH: Allow /dev/stdin as input alignment arg
#241 opened May 16, 2023 by corneliusroemer
ENH: Make multiple root-to-tip-plots to help with debugging
#228 opened Mar 13, 2023 by corneliusroemer
ERROR: No variation in sampling dates! Please specify your clock rate explicitly documentation question
#227 opened Mar 7, 2023 by BCMollett
7
Allow to output which node in the tree treetime failed at for better debugging
#203 opened Aug 12, 2022 by anna-parker
Error running treetime; RecursionError: maximum recursion depth exceeded while calling a Python object
#198 opened Jul 23, 2022 by jsan4christ
2
any problem with this?
#192 opened Jun 3, 2022 by liamxg
DOC: Clarify that method reconstruction methods "parsimony"="fitch" and "probabilistic"="ml" documentation
#175 opened Jan 12, 2022 by corneliusroemer
Adding branch_lengths table to outputs
#166 opened Oct 29, 2021 by murallcl
1
Help with ‘mugration’ models
#161 opened Oct 9, 2021 by lucadesabato
1
apparent date of filtered sequences
#159 opened Jul 23, 2021 by mdbaron42
3
Mugration p-value
#153 opened May 3, 2021 by ktmeaton
1
Reproducible Analysis
#147 opened Apr 6, 2021 by ktmeaton
2
Tree is showing points in the future
#145 opened Feb 17, 2021 by Vatsalars
3
ProTip! Adding no:label will show everything without a label.