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8 changes: 4 additions & 4 deletions 404.html
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<meta charset="UTF-8">
<meta name="viewport" content="width=device-width,initial-scale=1">
<meta name="turbo-root" content="/htan_missing_manual">
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<script data-cfasync="false">(function () { var el = document.documentElement, m = localStorage.getItem("doc_theme"), wm = window.matchMedia; if (m === "dark" || (!m && wm && wm("(prefers-color-scheme: dark)").matches)) { el.classList.add("dark") } else { el.classList.remove("dark") } })();</script>

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18 changes: 10 additions & 8 deletions access_controlled/cds_access/index.html
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<meta charset="UTF-8">
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<script data-cfasync="false">(function () { var el = document.documentElement, m = localStorage.getItem("doc_theme"), wm = window.matchMedia; if (m === "dark" || (!m && wm && wm("(prefers-color-scheme: dark)").matches)) { el.classList.add("dark") } else { el.classList.remove("dark") } })();</script>

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<ol>
<li>CDS Portal</li>
<li>HTAN Data Portal</li>
<li>Google BigQuery (Coming Soon!)</li>
<li>Google BigQuery</li>
</ol>
<doc-anchor-target id="1-generating-a-manifest-file-from-the-cds-portal">
<h2>
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<figcaption class="caption">HTAN Portal: Download DRS Manifest</figcaption>
</figure>
</p>
<doc-anchor-target id="3-generating-a-manifest-file-from-google-bigquery-coming-soon">
<doc-anchor-target id="3-generating-a-manifest-file-from-google-bigquery">
<h2>
<doc-anchor-trigger class="header-anchor-trigger" to="#3-generating-a-manifest-file-from-google-bigquery-coming-soon">#</doc-anchor-trigger>
<span>3. Generating a Manifest File from Google BigQuery (Coming Soon!)</span>
<doc-anchor-trigger class="header-anchor-trigger" to="#3-generating-a-manifest-file-from-google-bigquery">#</doc-anchor-trigger>
<span>3. Generating a Manifest File from Google BigQuery</span>
</h2>
</doc-anchor-target>
<p>HTAN metadata and a mapping of HTAN Data File IDs to CDS DRS URIs are available as Google BigQuery tables via the Institute for Systems Biology Cancer Gateway in the Cloud (ISB-CGC) (see <a href="https://docs.humantumoratlas.org/open_access/biq_query/">Google BigQuery</a>). These tables can be used to subset data to a cohort of interest, and obtain DRS URIs of files to access.</p>
<p>For a step-by-step guide on how to generate a DRS manifest file using Google BigQuery, please see the Python notebook <a href="https://github.com/isb-cgc/Community-Notebooks/blob/master/HTAN/Python%20Notebooks/Creating_CDS_Data_Import_Manifests_Using_BQ.ipynb">Creating_CDS_Data_Import_Manifests_Using_BQ.ipynb</a>.</p>
<doc-anchor-target id="accessing-data">
<h1>
<doc-anchor-trigger class="header-anchor-trigger" to="#accessing-data">#</doc-anchor-trigger>
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8 changes: 4 additions & 4 deletions access_controlled/db_gap/index.html
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<meta charset="UTF-8">
<meta name="viewport" content="width=device-width,initial-scale=1">
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<script data-cfasync="false">(function () { var el = document.documentElement, m = localStorage.getItem("doc_theme"), wm = window.matchMedia; if (m === "dark" || (!m && wm && wm("(prefers-color-scheme: dark)").matches)) { el.classList.add("dark") } else { el.classList.remove("dark") } })();</script>

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8 changes: 4 additions & 4 deletions access_controlled/introduction/index.html
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<meta charset="UTF-8">
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<meta charset="UTF-8">
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<meta charset="UTF-8">
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